LINC00388

Summary

LINC00388 (long intergenic non-protein coding RNA 388, HGNC:42716) is a long non-coding RNA gene on chromosome 13q11.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:42716
Approved symbol	LINC00388
Name	long intergenic non-protein coding RNA 388
Location	13q11
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000229788
Ensembl biotype	lncRNA
Entrez	100874153
RNAcentral	URS00004FBE26 — lncRNA, 663 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000412714

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000412714 — 2 exons

Exon	Start	End
ENSE00001731113	18611570	18611675
ENSE00001783296	18610298	18610854

Expression profiles

Bgee: expression breadth tissue_specific, 7 present calls, max score 64.94.

Top tissues by expression

7 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
cortical plate	UBERON:0005343	64.94	gold quality
vermiform appendix	UBERON:0001154	49.63	gold quality
prefrontal cortex	UBERON:0000451	48.48	gold quality
blood	UBERON:0000178	47.17	silver quality
gastrocnemius	UBERON:0001388	43.69	silver quality
heart left ventricle	UBERON:0002084	42.73	silver quality
right atrium auricular region	UBERON:0006631	38.40	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.32

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.