LINC00391

Summary

LINC00391 (long intergenic non-protein coding RNA 391, HGNC:42719) is a long non-coding RNA gene on chromosome 13q32.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:42719
Approved symbol	LINC00391
Name	long intergenic non-protein coding RNA 391
Location	13q32.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000238230
Ensembl biotype	lncRNA
Entrez	101927248
RNAcentral	URS000075C313 — lncRNA, 2381 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 35 — 35 lncRNA

ENST00000433569, ENST00000670861, ENST00000700880, ENST00000830699, ENST00000830700, ENST00000830701, ENST00000830702, ENST00000830703, ENST00000830704, ENST00000830705, ENST00000830706, ENST00000830707, ENST00000830708, ENST00000830709, ENST00000830710, ENST00000830711, ENST00000830712, ENST00000830713, ENST00000830714, ENST00000830715, ENST00000830716, ENST00000830717, ENST00000830718, ENST00000830719, ENST00000830720, ENST00000830721, ENST00000830722, ENST00000830723, ENST00000830724, ENST00000830725, ENST00000830726, ENST00000830727, ENST00000830728, ENST00000830729, ENST00000830730

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000433569 — 3 exons

Exon	Start	End
ENSE00001604989	94699694	94699889
ENSE00001689364	94701265	94702862
ENSE00001691852	94700688	94700737

Expression profiles

Bgee: expression breadth broad, 70 present calls, max score 64.05.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1172 / max 10.6727, expressed in 75 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
137852	0.1172	75

Top tissues by expression

70 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
ventricular zone	UBERON:0003053	64.05	gold quality
caudate nucleus	UBERON:0001873	63.51	gold quality
amygdala	UBERON:0001876	62.89	gold quality
temporal lobe	UBERON:0001871	62.86	gold quality
nucleus accumbens	UBERON:0001882	62.81	gold quality
putamen	UBERON:0001874	61.91	gold quality
ganglionic eminence	UBERON:0004023	61.48	gold quality
anterior cingulate cortex	UBERON:0009835	59.07	gold quality
cortical plate	UBERON:0005343	58.20	silver quality
Ammon’s horn	UBERON:0001954	58.04	gold quality
brain	UBERON:0000955	57.66	gold quality
cerebral cortex	UBERON:0000956	57.46	gold quality
Brodmann (1909) area 9	UBERON:0013540	57.29	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	57.26	gold quality
right frontal lobe	UBERON:0002810	57.20	gold quality
frontal cortex	UBERON:0001870	56.62	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	56.37	silver quality
prefrontal cortex	UBERON:0000451	56.20	gold quality
blood	UBERON:0000178	55.37	gold quality
multicellular organism	UBERON:0000468	53.68	gold quality
superior frontal gyrus	UBERON:0002661	53.24	gold quality
liver	UBERON:0002107	53.12	silver quality
cortex of kidney	UBERON:0001225	52.12	silver quality
islet of Langerhans	UBERON:0000006	51.95	silver quality
primary visual cortex	UBERON:0002436	51.78	gold quality
stromal cell of endometrium	CL:0002255	51.41	silver quality
hypothalamus	UBERON:0001898	51.38	gold quality
substantia nigra	UBERON:0002038	50.80	gold quality
placenta	UBERON:0001987	50.64	gold quality
corpus callosum	UBERON:0002336	50.46	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.15

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.