LINC00392

Summary

LINC00392 (long intergenic non-protein coding RNA 392, HGNC:42720) is a long non-coding RNA gene on chromosome 13q22.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:42720
Approved symbol	LINC00392
Name	long intergenic non-protein coding RNA 392
Location	13q22.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000228295
Ensembl biotype	lncRNA
Entrez	100874155
RNAcentral	URS000075E9BE — lncRNA, 366 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000430033, ENST00000660666, ENST00000666930, ENST00000793094, ENST00000793095, ENST00000793096

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000430033 — 3 exons

Exon	Start	End
ENSE00001638609	73587680	73588070
ENSE00001745010	73587339	73587445
ENSE00001795925	73564244	73564302

Expression profiles

Bgee: expression breadth ubiquitous, 127 present calls, max score 86.32.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0795 / max 101.5519, expressed in 5 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
135374	0.0712	4
135373	0.0084	3

Top tissues by expression

127 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.32	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	85.92	gold quality
bone marrow cell	CL:0002092	78.19	gold quality
sural nerve	UBERON:0015488	77.85	gold quality
hindlimb stylopod muscle	UBERON:0004252	74.93	gold quality
skeletal muscle tissue	UBERON:0001134	74.46	gold quality
colonic epithelium	UBERON:0000397	71.40	gold quality
right testis	UBERON:0004534	70.30	gold quality
tonsil	UBERON:0002372	69.73	gold quality
testis	UBERON:0000473	68.52	gold quality
left testis	UBERON:0004533	68.33	gold quality
bone marrow	UBERON:0002371	67.82	gold quality
muscle of leg	UBERON:0001383	67.58	gold quality
gastrocnemius	UBERON:0001388	67.09	gold quality
ventricular zone	UBERON:0003053	66.83	gold quality
ganglionic eminence	UBERON:0004023	65.77	gold quality
calcaneal tendon	UBERON:0003701	65.68	gold quality
stromal cell of endometrium	CL:0002255	63.95	gold quality
blood	UBERON:0000178	62.78	gold quality
urinary bladder	UBERON:0001255	61.94	gold quality
liver	UBERON:0002107	61.64	gold quality
cortical plate	UBERON:0005343	60.53	gold quality
lower esophagus mucosa	UBERON:0035834	57.85	gold quality
monocyte	CL:0000576	56.53	gold quality
leukocyte	CL:0000738	56.50	gold quality
lymph node	UBERON:0000029	56.29	gold quality
vermiform appendix	UBERON:0001154	56.14	gold quality
primary visual cortex	UBERON:0002436	55.42	gold quality
kidney	UBERON:0002113	55.41	gold quality
skin of leg	UBERON:0001511	55.24	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.47

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.