LINC00395

Summary

LINC00395 (long intergenic non-protein coding RNA 395, HGNC:42723) is a long non-coding RNA gene on chromosome 13q21.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:42723
Approved symbol	LINC00395
Name	long intergenic non-protein coding RNA 395
Location	13q21.31
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000231061
Ensembl biotype	lncRNA
Entrez	100874157
RNAcentral	URS000048F041 — lncRNA, 415 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 11 — 11 lncRNA

ENST00000444536, ENST00000451570, ENST00000773344, ENST00000773345, ENST00000773346, ENST00000773347, ENST00000773348, ENST00000773349, ENST00000773350, ENST00000773351, ENST00000773352

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000444536 — 4 exons

Exon	Start	End
ENSE00001711700	63687402	63687555
ENSE00001720696	63667681	63667839
ENSE00001749240	63714352	63714375
ENSE00001787285	63716950	63717018

Expression profiles

Bgee: expression breadth broad, 71 present calls, max score 85.43.

Top tissues by expression

71 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.43	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	82.82	gold quality
sural nerve	UBERON:0015488	68.09	silver quality
left testis	UBERON:0004533	67.05	gold quality
testis	UBERON:0000473	66.53	gold quality
right testis	UBERON:0004534	65.29	gold quality
duodenum	UBERON:0002114	58.10	gold quality
monocyte	CL:0000576	57.50	gold quality
Brodmann (1909) area 9	UBERON:0013540	55.78	gold quality
prefrontal cortex	UBERON:0000451	55.30	gold quality
islet of Langerhans	UBERON:0000006	55.23	gold quality
multicellular organism	UBERON:0000468	54.76	gold quality
blood	UBERON:0000178	54.56	gold quality
left adrenal gland cortex	UBERON:0035825	51.61	gold quality
left adrenal gland	UBERON:0001234	50.52	gold quality
body of pancreas	UBERON:0001150	50.35	gold quality
right lobe of thyroid gland	UBERON:0001119	49.81	gold quality
heart left ventricle	UBERON:0002084	49.26	gold quality
small intestine	UBERON:0002108	48.79	gold quality
gastrocnemius	UBERON:0001388	48.43	gold quality
tibial artery	UBERON:0007610	48.09	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	48.06	gold quality
caudate nucleus	UBERON:0001873	47.60	gold quality
fundus of stomach	UBERON:0001160	46.55	gold quality
prostate gland	UBERON:0002367	46.14	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	45.69	gold quality
kidney	UBERON:0002113	45.65	gold quality
adult mammalian kidney	UBERON:0000082	45.44	gold quality
small intestine Peyer’s patch	UBERON:0003454	45.29	gold quality
upper lobe of left lung	UBERON:0008952	45.27	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.79

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.