LINC00396

Summary

LINC00396 (long intergenic non-protein coding RNA 396, HGNC:42724) is a long non-coding RNA gene on chromosome 13q34.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:42724
Approved symbol	LINC00396
Name	long intergenic non-protein coding RNA 396
Location	13q34
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000231428
Ensembl biotype	lncRNA
Entrez	104355146
RNAcentral	URS000032BD33 — lncRNA, 439 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000411690

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000411690 — 4 exons

Exon	Start	End
ENSE00001615598	110054014	110054182
ENSE00001680165	110054773	110054952
ENSE00001697406	110053285	110053311
ENSE00001783060	110053851	110053913

Expression profiles

Bgee: expression breadth broad, 66 present calls, max score 61.41.

Top tissues by expression

171 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	61.41	gold quality
monocyte	CL:0000576	59.03	gold quality
corpus callosum	UBERON:0002336	57.87	gold quality
islet of Langerhans	UBERON:0000006	57.63	gold quality
nipple	UBERON:0002030	57.41	gold quality
lymph node	UBERON:0000029	56.40	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	56.28	gold quality
inferior vagus X ganglion	UBERON:0005363	56.14	gold quality
gingival epithelium	UBERON:0001949	55.87	gold quality
saphenous vein	UBERON:0007318	55.81	gold quality
trigeminal ganglion	UBERON:0001675	55.74	gold quality
adrenal cortex	UBERON:0001235	55.63	gold quality
bone marrow	UBERON:0002371	55.52	gold quality
cardia of stomach	UBERON:0001162	55.20	gold quality
pericardium	UBERON:0002407	55.20	gold quality
ventral tegmental area	UBERON:0002691	55.14	gold quality
dorsal root ganglion	UBERON:0000044	54.99	gold quality
nasal cavity epithelium	UBERON:0005384	54.97	gold quality
subthalamic nucleus	UBERON:0001906	54.95	gold quality
thymus	UBERON:0002370	54.91	gold quality
cerebellar vermis	UBERON:0004720	54.83	gold quality
fundus of stomach	UBERON:0001160	54.81	gold quality
penis	UBERON:0000989	54.69	gold quality
dorsal plus ventral thalamus	UBERON:0001897	54.67	gold quality
synovial joint	UBERON:0002217	54.65	gold quality
epithelium of nasopharynx	UBERON:0001951	54.64	gold quality
renal medulla	UBERON:0000362	54.62	gold quality
pylorus	UBERON:0001166	54.54	gold quality
medulla oblongata	UBERON:0001896	54.51	gold quality
trachea	UBERON:0003126	54.51	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.30

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.