LINC00398

Summary

LINC00398 (long intergenic non-protein coding RNA 398, HGNC:42727) is a long non-coding RNA gene on chromosome 13q12.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:42727
Approved symbol	LINC00398
Name	long intergenic non-protein coding RNA 398
Location	13q12.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000237879
Ensembl biotype	lncRNA
Entrez	100874158
RNAcentral	URS000023B262 — lncRNA, 906 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 42 — 42 lncRNA

ENST00000414407, ENST00000440633, ENST00000665143, ENST00000690833, ENST00000693404, ENST00000715721, ENST00000799400, ENST00000799401, ENST00000799402, ENST00000799403, ENST00000799404, ENST00000799405, ENST00000799406, ENST00000799407, ENST00000799408, ENST00000799409, ENST00000799410, ENST00000799411, ENST00000799412, ENST00000799413, ENST00000799414, ENST00000799415, ENST00000799416, ENST00000799417, ENST00000799418, ENST00000799419, ENST00000799420, ENST00000799421, ENST00000799422, ENST00000799423, ENST00000799424, ENST00000799425, ENST00000799426, ENST00000799427, ENST00000799428, ENST00000799429, ENST00000799430, ENST00000799431, ENST00000799432, ENST00000799433, ENST00000799434, ENST00000799435

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000414407 — 2 exons

Exon	Start	End
ENSE00004187907	30803176	30803592
ENSE00004187911	30810127	30811750

Expression profiles

Bgee: expression breadth ubiquitous, 120 present calls, max score 66.50.

Top tissues by expression

120 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow cell	CL:0002092	66.50	silver quality
blood	UBERON:0000178	62.50	gold quality
prefrontal cortex	UBERON:0000451	61.52	gold quality
skeletal muscle tissue	UBERON:0001134	60.79	gold quality
right adrenal gland cortex	UBERON:0035827	60.68	gold quality
right adrenal gland	UBERON:0001233	60.64	gold quality
calcaneal tendon	UBERON:0003701	60.11	gold quality
left adrenal gland	UBERON:0001234	59.40	gold quality
frontal cortex	UBERON:0001870	59.20	gold quality
adrenal gland	UBERON:0002369	59.20	gold quality
adrenal tissue	UBERON:0018303	58.46	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	58.21	gold quality
left adrenal gland cortex	UBERON:0035825	58.11	gold quality
Brodmann (1909) area 9	UBERON:0013540	57.98	gold quality
bone marrow	UBERON:0002371	57.79	gold quality
islet of Langerhans	UBERON:0000006	57.59	gold quality
stromal cell of endometrium	CL:0002255	57.28	gold quality
cerebral cortex	UBERON:0000956	56.75	gold quality
right frontal lobe	UBERON:0002810	56.73	gold quality
cerebellum	UBERON:0002037	56.68	gold quality
cerebellar hemisphere	UBERON:0002245	56.61	gold quality
cerebellar cortex	UBERON:0002129	56.58	gold quality
hindlimb stylopod muscle	UBERON:0004252	56.34	gold quality
right hemisphere of cerebellum	UBERON:0014890	56.20	gold quality
superior frontal gyrus	UBERON:0002661	55.06	gold quality
liver	UBERON:0002107	54.93	gold quality
nucleus accumbens	UBERON:0001882	54.85	gold quality
pancreas	UBERON:0001264	54.47	gold quality
granulocyte	CL:0000094	54.19	gold quality
gall bladder	UBERON:0002110	54.10	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.64

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.