LINC00399

Summary

LINC00399 (long intergenic non-protein coding RNA 399, HGNC:42728) is a long non-coding RNA gene on chromosome 13q33.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:42728
Approved symbol	LINC00399
Name	long intergenic non-protein coding RNA 399
Location	13q33.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00021596
Ensembl gene	ENSG00000229792
Ensembl biotype	lncRNA
Entrez	104326054
RNAcentral	URS00007E3588 — lncRNA, 425 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000439008

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000439008 — 2 exons

Exon	Start	End
ENSE00001666416	109401341	109401641
ENSE00004096416	109400403	109400808

Expression profiles

Bgee: expression breadth ubiquitous, 115 present calls, max score 81.70.

Top tissues by expression

115 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.70	silver quality
sural nerve	UBERON:0015488	67.44	gold quality
bone marrow	UBERON:0002371	64.46	gold quality
bone marrow cell	CL:0002092	63.20	silver quality
liver	UBERON:0002107	62.45	gold quality
blood	UBERON:0000178	61.54	gold quality
monocyte	CL:0000576	61.36	gold quality
duodenum	UBERON:0002114	61.29	gold quality
right lobe of liver	UBERON:0001114	59.77	gold quality
placenta	UBERON:0001987	58.82	gold quality
islet of Langerhans	UBERON:0000006	57.99	gold quality
vermiform appendix	UBERON:0001154	56.94	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	56.11	gold quality
prefrontal cortex	UBERON:0000451	56.08	gold quality
superior frontal gyrus	UBERON:0002661	56.05	gold quality
gall bladder	UBERON:0002110	55.93	gold quality
calcaneal tendon	UBERON:0003701	54.48	gold quality
lymph node	UBERON:0000029	54.14	gold quality
granulocyte	CL:0000094	53.51	gold quality
pancreas	UBERON:0001264	53.38	gold quality
muscle of leg	UBERON:0001383	53.18	gold quality
primary visual cortex	UBERON:0002436	52.61	gold quality
endometrium	UBERON:0001295	52.59	gold quality
corpus callosum	UBERON:0002336	52.58	gold quality
rectum	UBERON:0001052	52.39	gold quality
gastrocnemius	UBERON:0001388	52.35	gold quality
body of pancreas	UBERON:0001150	51.58	gold quality
tonsil	UBERON:0002372	51.27	gold quality
small intestine	UBERON:0002108	51.13	gold quality
testis	UBERON:0000473	50.02	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.79

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.