LINC00400

Summary

LINC00400 (long intergenic non-protein coding RNA 400, HGNC:42729) is a long non-coding RNA gene on chromosome 13q14.11.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:42729
Approved symbol	LINC00400
Name	long intergenic non-protein coding RNA 400
Location	13q14.11
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000229928
Ensembl biotype	lncRNA
Entrez	100874159
RNAcentral	URS000075AE41 — lncRNA, 664 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000425609

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000425609 — 2 exons

Exon	Start	End
ENSE00001731943	43158631	43159005
ENSE00001772730	43159295	43159466

Expression profiles

Bgee: expression breadth broad, 54 present calls, max score 87.64.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0195 / max 19.3029, expressed in 2 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
134910	0.0195	2

Top tissues by expression

54 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
adrenal tissue	UBERON:0018303	87.64	gold quality
right adrenal gland cortex	UBERON:0035827	68.45	gold quality
right adrenal gland	UBERON:0001233	67.52	gold quality
adrenal gland	UBERON:0002369	67.26	gold quality
left adrenal gland	UBERON:0001234	65.03	gold quality
left adrenal gland cortex	UBERON:0035825	64.61	gold quality
prefrontal cortex	UBERON:0000451	58.64	gold quality
blood	UBERON:0000178	52.72	gold quality
monocyte	CL:0000576	52.08	silver quality
islet of Langerhans	UBERON:0000006	50.92	gold quality
gastrocnemius	UBERON:0001388	49.31	silver quality
heart left ventricle	UBERON:0002084	48.57	gold quality
ascending aorta	UBERON:0001496	46.92	gold quality
heart	UBERON:0000948	46.52	gold quality
omental fat pad	UBERON:0010414	46.09	gold quality
body of pancreas	UBERON:0001150	45.43	silver quality
left coronary artery	UBERON:0001626	44.12	silver quality
body of uterus	UBERON:0009853	43.93	gold quality
body of stomach	UBERON:0001161	43.90	silver quality
lower esophagus muscularis layer	UBERON:0035833	43.84	gold quality
superior frontal gyrus	UBERON:0002661	43.79	silver quality
putamen	UBERON:0001874	43.17	gold quality
anterior cingulate cortex	UBERON:0009835	42.85	silver quality
cerebral cortex	UBERON:0000956	42.65	gold quality
stomach	UBERON:0000945	42.56	silver quality
caudate nucleus	UBERON:0001873	41.85	silver quality
muscle layer of sigmoid colon	UBERON:0035805	41.42	silver quality
skin of leg	UBERON:0001511	41.21	silver quality
tibial artery	UBERON:0007610	41.00	silver quality
endometrium	UBERON:0001295	40.75	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.65

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.