LINC00410

Summary

LINC00410 (long intergenic non-protein coding RNA 410, HGNC:42742) is a long non-coding RNA gene on chromosome 13q31.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:42742
Approved symbol	LINC00410
Name	long intergenic non-protein coding RNA 410
Location	13q31.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000231674
Ensembl biotype	lncRNA
Entrez	144776
RNAcentral	URS0000076CAA — lncRNA, 2018 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000419272

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000419272 — 6 exons

Exon	Start	End
ENSE00001615246	90890954	90892441
ENSE00001636243	90911331	90911454
ENSE00001688616	90893387	90893540
ENSE00001720293	90901221	90901238
ENSE00001793316	90903394	90903510
ENSE00001804998	90926481	90926597

Expression profiles

Bgee: expression breadth broad, 34 present calls, max score 79.14.

Top tissues by expression

160 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
buccal mucosa cell	CL:0002336	79.14	silver quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.64	silver quality
ventricular zone	UBERON:0003053	57.63	silver quality
cortical plate	UBERON:0005343	56.57	silver quality
esophagus squamous epithelium	UBERON:0006920	51.98	gold quality
lower lobe of lung	UBERON:0008949	50.83	silver quality
cortex of kidney	UBERON:0001225	50.62	gold quality
upper lobe of lung	UBERON:0008948	50.40	silver quality
muscle of leg	UBERON:0001383	48.27	silver quality
adult mammalian kidney	UBERON:0000082	48.18	gold quality
islet of Langerhans	UBERON:0000006	47.77	silver quality
gastrocnemius	UBERON:0001388	47.58	silver quality
hypothalamus	UBERON:0001898	47.49	gold quality
upper leg skin	UBERON:0004262	46.58	silver quality
bone marrow	UBERON:0002371	46.19	gold quality
vastus lateralis	UBERON:0001379	45.80	gold quality
quadriceps femoris	UBERON:0001377	45.67	gold quality
amniotic fluid	UBERON:0000173	45.46	gold quality
kidney	UBERON:0002113	45.36	gold quality
tendon of biceps brachii	UBERON:0008188	45.33	gold quality
lateral nuclear group of thalamus	UBERON:0002736	44.78	gold quality
lung	UBERON:0002048	43.38	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
nipple	UBERON:0002030	43.34	gold quality
tendon	UBERON:0000043	43.21	gold quality
lymph node	UBERON:0000029	42.74	silver quality
mucosa of paranasal sinus	UBERON:0005030	42.68	gold quality
secondary oocyte	CL:0000655	42.57	gold quality
placenta	UBERON:0001987	42.48	gold quality
skin of hip	UBERON:0001554	42.43	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.44

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.