LINC00411

Summary

LINC00411 (long intergenic non-protein coding RNA 411, HGNC:42744) is a long non-coding RNA gene on chromosome 13q32.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:42744
Approved symbol	LINC00411
Name	long intergenic non-protein coding RNA 411
Location	13q32.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000229599
Ensembl biotype	lncRNA
Entrez	100874161
RNAcentral	URS000075AFF5 — lncRNA, 411 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000436722, ENST00000657351, ENST00000667834

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000436722 — 3 exons

Exon	Start	End
ENSE00001732463	100941002	100941132
ENSE00004131408	100934013	100934238
ENSE00004131409	100944175	100944525

Expression profiles

Bgee: expression breadth broad, 25 present calls, max score 66.05.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0035 / max 3.2212, expressed in 2 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
138059	0.0035	2

Top tissues by expression

25 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
lung	UBERON:0002048	66.05	silver quality
right testis	UBERON:0004534	60.99	gold quality
left testis	UBERON:0004533	60.74	gold quality
testis	UBERON:0000473	60.04	gold quality
monocyte	CL:0000576	59.85	gold quality
muscle tissue	UBERON:0002385	59.79	silver quality
cortex of kidney	UBERON:0001225	58.68	gold quality
thoracic mammary gland	UBERON:0005200	58.11	silver quality
blood	UBERON:0000178	53.74	gold quality
muscle of leg	UBERON:0001383	50.16	gold quality
gastrocnemius	UBERON:0001388	49.73	gold quality
nucleus accumbens	UBERON:0001882	49.04	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	46.28	gold quality
skin of abdomen	UBERON:0001416	45.25	gold quality
islet of Langerhans	UBERON:0000006	43.72	silver quality
heart left ventricle	UBERON:0002084	43.31	silver quality
hypothalamus	UBERON:0001898	42.60	silver quality
tibial nerve	UBERON:0001323	42.44	gold quality
body of stomach	UBERON:0001161	42.37	silver quality
putamen	UBERON:0001874	42.07	silver quality
Ammon’s horn	UBERON:0001954	40.83	silver quality
esophagus mucosa	UBERON:0002469	40.09	silver quality
amygdala	UBERON:0001876	39.97	silver quality
lower esophagus muscularis layer	UBERON:0035833	38.32	silver quality
prostate gland	UBERON:0002367	37.20	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.00

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.