LINC00412

Summary

LINC00412 (long intergenic non-protein coding RNA 412, HGNC:42745) is a long non-coding RNA gene on chromosome 13q12.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:42745
Approved symbol	LINC00412
Name	long intergenic non-protein coding RNA 412
Location	13q12.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000234772
Ensembl biotype	lncRNA
Entrez	102723332
RNAcentral	URS000075C894 — lncRNA, 866 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 34 — 34 lncRNA

ENST00000444744, ENST00000610335, ENST00000620494, ENST00000667032, ENST00000715722, ENST00000840484, ENST00000840485, ENST00000840486, ENST00000840487, ENST00000840488, ENST00000840489, ENST00000840490, ENST00000840491, ENST00000840492, ENST00000840493, ENST00000840494, ENST00000840495, ENST00000840496, ENST00000840497, ENST00000840498, ENST00000840499, ENST00000840500, ENST00000840501, ENST00000840502, ENST00000840503, ENST00000840504, ENST00000840505, ENST00000840506, ENST00000840507, ENST00000840508, ENST00000840509, ENST00000840510, ENST00000840511, ENST00000840512

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000444744 — 3 exons

Exon	Start	End
ENSE00004263904	27250631	27251253
ENSE00004263908	27236049	27236587
ENSE00004263930	27236698	27236858

Expression profiles

Bgee: expression breadth ubiquitous, 127 present calls, max score 82.13.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 3.3069 / max 55.3051, expressed in 1189 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
136485	3.3069	1189

Top tissues by expression

127 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	82.13	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.73	silver quality
right uterine tube	UBERON:0001302	73.69	gold quality
sural nerve	UBERON:0015488	73.40	gold quality
ventricular zone	UBERON:0003053	68.68	gold quality
bone marrow cell	CL:0002092	67.03	silver quality
hindlimb stylopod muscle	UBERON:0004252	66.49	gold quality
lymph node	UBERON:0000029	65.89	gold quality
calcaneal tendon	UBERON:0003701	65.87	gold quality
ganglionic eminence	UBERON:0004023	65.68	gold quality
corpus callosum	UBERON:0002336	65.50	gold quality
skeletal muscle tissue	UBERON:0001134	65.34	gold quality
right lobe of thyroid gland	UBERON:0001119	62.42	gold quality
mucosa of transverse colon	UBERON:0004991	62.36	gold quality
adrenal tissue	UBERON:0018303	61.28	gold quality
tonsil	UBERON:0002372	60.48	gold quality
pituitary gland	UBERON:0000007	60.33	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	60.12	gold quality
vermiform appendix	UBERON:0001154	59.90	gold quality
adenohypophysis	UBERON:0002196	59.60	gold quality
thyroid gland	UBERON:0002046	59.36	gold quality
blood	UBERON:0000178	59.29	gold quality
leukocyte	CL:0000738	59.09	gold quality
monocyte	CL:0000576	58.92	gold quality
bone marrow	UBERON:0002371	58.88	gold quality
endometrium	UBERON:0001295	58.75	gold quality
islet of Langerhans	UBERON:0000006	58.65	gold quality
left lobe of thyroid gland	UBERON:0001120	58.21	gold quality
spleen	UBERON:0002106	58.07	gold quality
pancreas	UBERON:0001264	58.02	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.69

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.