LINC00415

Summary

LINC00415 (long intergenic non-protein coding RNA 415, HGNC:42748) is a long non-coding RNA gene on chromosome 13q12.13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:42748
Approved symbol	LINC00415
Name	long intergenic non-protein coding RNA 415
Location	13q12.13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000231983
Ensembl biotype	lncRNA
Entrez	107984009
RNAcentral	URS0000BC464C — lncRNA, 451 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000439079, ENST00000739568, ENST00000739569

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000439079 — 3 exons

Exon	Start	End
ENSE00004074840	26052271	26052672
ENSE00004074842	26053348	26053430
ENSE00004074843	26059469	26059618

Expression profiles

Bgee: expression breadth broad, 68 present calls, max score 67.01.

Top tissues by expression

68 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
hindlimb stylopod muscle	UBERON:0004252	67.01	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	65.96	gold quality
skeletal muscle tissue	UBERON:0001134	63.98	gold quality
left testis	UBERON:0004533	59.78	gold quality
lymph node	UBERON:0000029	59.71	gold quality
testis	UBERON:0000473	59.29	gold quality
cortex of kidney	UBERON:0001225	59.00	gold quality
right testis	UBERON:0004534	57.73	gold quality
islet of Langerhans	UBERON:0000006	57.42	gold quality
prefrontal cortex	UBERON:0000451	56.33	gold quality
calcaneal tendon	UBERON:0003701	56.24	gold quality
monocyte	CL:0000576	55.04	gold quality
muscle of leg	UBERON:0001383	54.75	gold quality
fallopian tube	UBERON:0003889	54.07	gold quality
blood	UBERON:0000178	53.93	gold quality
gastrocnemius	UBERON:0001388	53.59	gold quality
liver	UBERON:0002107	52.61	silver quality
multicellular organism	UBERON:0000468	50.70	gold quality
amygdala	UBERON:0001876	49.39	gold quality
thoracic mammary gland	UBERON:0005200	48.81	silver quality
popliteal artery	UBERON:0002250	48.13	gold quality
right lobe of thyroid gland	UBERON:0001119	47.51	gold quality
thyroid gland	UBERON:0002046	47.25	gold quality
ascending aorta	UBERON:0001496	46.55	gold quality
Brodmann (1909) area 9	UBERON:0013540	45.87	gold quality
left lobe of thyroid gland	UBERON:0001120	45.60	gold quality
right coronary artery	UBERON:0001625	44.59	gold quality
stomach	UBERON:0000945	44.41	gold quality
cerebral cortex	UBERON:0000956	44.20	gold quality
body of stomach	UBERON:0001161	44.08	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.32

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.