LINC00424

Summary

LINC00424 (long intergenic non-protein coding RNA 424, HGNC:42815) is a long non-coding RNA gene on chromosome 13q12.11.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:42815
Approved symbol	LINC00424
Name	long intergenic non-protein coding RNA 424
Location	13q12.11
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000226722
Ensembl biotype	lncRNA
Entrez	100874182
RNAcentral	URS000075A773 — lncRNA, 466 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 9 lncRNA

ENST00000413124, ENST00000624644, ENST00000653691, ENST00000654346, ENST00000663265, ENST00000669854, ENST00000752763, ENST00000752764, ENST00000752765

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000413124 — 3 exons

Exon	Start	End
ENSE00001756618	21875366	21875566
ENSE00004099226	21878135	21878262
ENSE00004099227	21872764	21873222

Expression profiles

Bgee: expression breadth broad, 72 present calls, max score 85.70.

Top tissues by expression

173 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	85.70	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.13	gold quality
buccal mucosa cell	CL:0002336	79.78	gold quality
sperm	CL:0000019	77.24	gold quality
hindlimb stylopod muscle	UBERON:0004252	65.84	gold quality
esophagus squamous epithelium	UBERON:0006920	63.95	gold quality
epithelium of nasopharynx	UBERON:0001951	63.27	gold quality
secondary oocyte	CL:0000655	61.41	silver quality
left testis	UBERON:0004533	61.22	gold quality
nasal cavity epithelium	UBERON:0005384	60.83	gold quality
amniotic fluid	UBERON:0000173	60.44	gold quality
testis	UBERON:0000473	60.10	gold quality
right testis	UBERON:0004534	59.64	gold quality
gingival epithelium	UBERON:0001949	59.02	gold quality
superficial temporal artery	UBERON:0001614	58.94	gold quality
tibia	UBERON:0000979	58.88	gold quality
mucosa of paranasal sinus	UBERON:0005030	58.70	gold quality
nasal cavity mucosa	UBERON:0001826	58.37	gold quality
gingiva	UBERON:0001828	58.09	gold quality
trabecular bone tissue	UBERON:0002483	57.95	gold quality
tonsil	UBERON:0002372	57.83	gold quality
Brodmann (1909) area 23	UBERON:0013554	57.82	gold quality
primary visual cortex	UBERON:0002436	57.69	gold quality
metanephros	UBERON:0000081	57.52	gold quality
oral cavity	UBERON:0000167	57.46	gold quality
placenta	UBERON:0001987	57.46	gold quality
upper leg skin	UBERON:0004262	57.05	silver quality
middle temporal gyrus	UBERON:0002771	57.03	gold quality
biceps brachii	UBERON:0001507	55.73	gold quality
seminal vesicle	UBERON:0000998	55.48	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.47

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.