LINC00427

Summary

LINC00427 (long intergenic non-protein coding RNA 427, HGNC:42762) is a long non-coding RNA gene on chromosome 13q12.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:42762
Approved symbol	LINC00427
Name	long intergenic non-protein coding RNA 427
Location	13q12.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000236463
Ensembl biotype	lncRNA
Entrez	100507040
RNAcentral	URS00026A1E25 — lncRNA, 420 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000412722, ENST00000718389

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000412722 — 2 exons

Exon	Start	End
ENSE00001594430	30319749	30319903
ENSE00001612692	30316360	30316634

Expression profiles

Bgee: expression breadth ubiquitous, 145 present calls, max score 92.87.

Top tissues by expression

231 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	92.87	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	90.95	gold quality
buccal mucosa cell	CL:0002336	85.04	gold quality
ganglionic eminence	UBERON:0004023	68.94	gold quality
right testis	UBERON:0004534	68.89	gold quality
left testis	UBERON:0004533	68.10	gold quality
testis	UBERON:0000473	65.65	gold quality
colonic epithelium	UBERON:0000397	65.50	silver quality
thymus	UBERON:0002370	61.69	silver quality
right coronary artery	UBERON:0001625	58.87	gold quality
lymph node	UBERON:0000029	57.73	gold quality
tendon of biceps brachii	UBERON:0008188	57.70	gold quality
right ovary	UBERON:0002118	56.99	gold quality
endocervix	UBERON:0000458	56.92	gold quality
descending thoracic aorta	UBERON:0002345	56.33	gold quality
vermiform appendix	UBERON:0001154	56.09	gold quality
calcaneal tendon	UBERON:0003701	56.03	gold quality
monocyte	CL:0000576	55.75	gold quality
body of uterus	UBERON:0009853	55.57	gold quality
gall bladder	UBERON:0002110	55.09	gold quality
mucosa of transverse colon	UBERON:0004991	55.09	gold quality
vena cava	UBERON:0004087	54.81	gold quality
tendon	UBERON:0000043	54.47	gold quality
corpus callosum	UBERON:0002336	54.13	gold quality
muscle layer of sigmoid colon	UBERON:0035805	53.95	gold quality
tibial artery	UBERON:0007610	53.91	gold quality
muscle of leg	UBERON:0001383	53.89	gold quality
popliteal artery	UBERON:0002250	53.86	gold quality
aorta	UBERON:0000947	53.65	gold quality
thoracic aorta	UBERON:0001515	53.55	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.30

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.