LINC00428

Summary

LINC00428 (long intergenic non-protein coding RNA 428, HGNC:42763) is a long non-coding RNA gene on chromosome 13q14.11.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:42763
Approved symbol	LINC00428
Name	long intergenic non-protein coding RNA 428
Location	13q14.11
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000229546
Ensembl biotype	lncRNA
Entrez	104355147
RNAcentral	URS00007E36E2 — lncRNA, 596 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000415620, ENST00000828781, ENST00000828782, ENST00000828783, ENST00000828784, ENST00000828785

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000415620 — 2 exons

Exon	Start	End
ENSE00001639887	42842414	42842551
ENSE00001737542	42842799	42842887

Expression profiles

Bgee: expression breadth broad, 45 present calls, max score 97.19.

Top tissues by expression

45 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	97.19	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	78.74	gold quality
bone marrow	UBERON:0002371	71.50	gold quality
monocyte	CL:0000576	64.26	gold quality
blood	UBERON:0000178	63.23	gold quality
Brodmann (1909) area 9	UBERON:0013540	61.46	gold quality
lower esophagus muscularis layer	UBERON:0035833	58.54	gold quality
gastrocnemius	UBERON:0001388	58.39	gold quality
body of stomach	UBERON:0001161	57.88	gold quality
prostate gland	UBERON:0002367	57.66	gold quality
subcutaneous adipose tissue	UBERON:0002190	57.30	gold quality
left adrenal gland	UBERON:0001234	57.29	gold quality
heart left ventricle	UBERON:0002084	56.59	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	55.67	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	54.77	gold quality
calcaneal tendon	UBERON:0003701	54.65	gold quality
colon	UBERON:0001155	54.53	gold quality
tibial artery	UBERON:0007610	54.48	gold quality
left coronary artery	UBERON:0001626	54.12	gold quality
omental fat pad	UBERON:0010414	53.29	gold quality
right atrium auricular region	UBERON:0006631	53.19	gold quality
thoracic aorta	UBERON:0001515	53.14	gold quality
endometrium	UBERON:0001295	52.99	gold quality
thyroid gland	UBERON:0002046	52.91	gold quality
left lobe of thyroid gland	UBERON:0001120	52.84	gold quality
pituitary gland	UBERON:0000007	52.65	gold quality
skin of leg	UBERON:0001511	52.20	gold quality
caudate nucleus	UBERON:0001873	51.77	gold quality
ascending aorta	UBERON:0001496	51.41	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	51.19	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.98

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.