LINC00431

Summary

LINC00431 (long intergenic non-protein coding RNA 431, HGNC:42766) is a unprocessed pseudogene on chromosome 13q34.

At a glance

• Gene type: non-coding (transcribed_unprocessed_pseudogene) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:42766
Approved symbol	LINC00431
Name	long intergenic non-protein coding RNA 431
Location	13q34
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000225760
Ensembl biotype	transcribed_unprocessed_pseudogene
Entrez	104355135
RNAcentral	URS00007E4E65 — lncRNA, 729 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 transcribed_unprocessed_pseudogene

ENST00000636375

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000636375 — 1 exons

Exon	Start	End
ENSE00003800995	110989980	110990138

Expression profiles

Bgee: expression breadth ubiquitous, 120 present calls, max score 79.95.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 1.0015 / max 287.6178, expressed in 128 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
136084	1.0015	128

Top tissues by expression

130 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	79.95	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.88	gold quality
stromal cell of endometrium	CL:0002255	66.73	gold quality
right uterine tube	UBERON:0001302	62.77	gold quality
mucosa of transverse colon	UBERON:0004991	60.40	gold quality
apex of heart	UBERON:0002098	57.52	gold quality
prefrontal cortex	UBERON:0000451	45.92	gold quality
bone marrow	UBERON:0002371	45.06	gold quality
right coronary artery	UBERON:0001625	43.97	gold quality
right ovary	UBERON:0002118	43.96	gold quality
ganglionic eminence	UBERON:0004023	43.85	gold quality
bone marrow cell	CL:0002092	43.73	gold quality
monocyte	CL:0000576	43.68	gold quality
spleen	UBERON:0002106	42.73	gold quality
islet of Langerhans	UBERON:0000006	42.56	gold quality
leukocyte	CL:0000738	42.23	gold quality
cortex of kidney	UBERON:0001225	41.68	gold quality
placenta	UBERON:0001987	41.52	gold quality
vermiform appendix	UBERON:0001154	41.20	gold quality
ventricular zone	UBERON:0003053	40.74	silver quality
blood	UBERON:0000178	40.42	gold quality
frontal cortex	UBERON:0001870	40.40	gold quality
descending thoracic aorta	UBERON:0002345	40.40	gold quality
left adrenal gland cortex	UBERON:0035825	40.03	gold quality
hindlimb stylopod muscle	UBERON:0004252	39.97	silver quality
left ovary	UBERON:0002119	39.84	gold quality
myometrium	UBERON:0001296	39.63	gold quality
muscle of leg	UBERON:0001383	39.32	gold quality
ovary	UBERON:0000992	39.11	gold quality
gastrocnemius	UBERON:0001388	39.09	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.90

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.