LINC00454

Summary

LINC00454 (long intergenic non-protein coding RNA 454, HGNC:42802) is a long non-coding RNA gene on chromosome 13q34.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:42802
Approved symbol	LINC00454
Name	long intergenic non-protein coding RNA 454
Location	13q34
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000226921
Ensembl biotype	lncRNA
Entrez	100874178
RNAcentral	URS0000A77268 — lncRNA, 922 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 15 — 15 lncRNA

ENST00000425483, ENST00000430978, ENST00000442500, ENST00000608044, ENST00000609493, ENST00000609861, ENST00000610194, ENST00000661456, ENST00000671045, ENST00000757340, ENST00000757341, ENST00000757342, ENST00000757343, ENST00000757344, ENST00000757345

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000425483 — 3 exons

Exon	Start	End
ENSE00001722217	113881348	113881492
ENSE00004108354	113880361	113880895
ENSE00004108360	113883415	113883588

Expression profiles

Bgee: expression breadth broad, 82 present calls, max score 90.50.

Top tissues by expression

194 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	90.50	gold quality
right testis	UBERON:0004534	85.98	gold quality
left testis	UBERON:0004533	85.25	gold quality
testis	UBERON:0000473	82.01	gold quality
tibialis anterior	UBERON:0001385	77.18	silver quality
kidney epithelium	UBERON:0004819	74.89	gold quality
deltoid	UBERON:0001476	67.27	gold quality
cardiac muscle of right atrium	UBERON:0003379	67.05	gold quality
pancreatic ductal cell	CL:0002079	66.56	silver quality
left ventricle myocardium	UBERON:0006566	66.56	gold quality
quadriceps femoris	UBERON:0001377	66.06	gold quality
epithelial cell of pancreas	CL:0000083	65.47	gold quality
upper arm skin	UBERON:0004263	64.65	gold quality
vastus lateralis	UBERON:0001379	64.38	gold quality
myocardium	UBERON:0002349	64.26	gold quality
nasal cavity epithelium	UBERON:0005384	64.10	gold quality
ventricular zone	UBERON:0003053	63.29	gold quality
biceps brachii	UBERON:0001507	63.14	gold quality
heart right ventricle	UBERON:0002080	62.76	gold quality
skeletal muscle tissue	UBERON:0001134	62.03	gold quality
ileal mucosa	UBERON:0000331	60.94	silver quality
cerebellar vermis	UBERON:0004720	59.80	gold quality
buccal mucosa cell	CL:0002336	58.57	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	57.16	gold quality
upper leg skin	UBERON:0004262	57.12	silver quality
adult organism	UBERON:0007023	52.94	gold quality
pigmented layer of retina	UBERON:0001782	52.75	gold quality
parotid gland	UBERON:0001831	52.24	gold quality
oral cavity	UBERON:0000167	52.18	gold quality
Brodmann (1909) area 46	UBERON:0006483	50.98	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.13

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.