LINC00463

Summary

LINC00463 (long intergenic non-protein coding RNA 463, HGNC:42813) is a long non-coding RNA gene on chromosome 13q12.13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:42813
Approved symbol	LINC00463
Name	long intergenic non-protein coding RNA 463
Location	13q12.13
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_l2_00007499
Ensembl gene	ENSG00000234056
Ensembl biotype	lncRNA
Entrez	101928922
RNAcentral	URS0000759A37 — lncRNA, 1073 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 14 — 14 lncRNA

ENST00000413501, ENST00000657426, ENST00000669952, ENST00000691184, ENST00000803688, ENST00000803689, ENST00000803690, ENST00000803691, ENST00000803692, ENST00000803693, ENST00000803694, ENST00000803695, ENST00000803696, ENST00000803697

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000413501 — 4 exons

Exon	Start	End
ENSE00001600706	25173913	25174087
ENSE00001793405	25176676	25176849
ENSE00004194357	25179777	25180138
ENSE00004194375	25172812	25173322

Expression profiles

Bgee: expression breadth broad, 79 present calls, max score 92.15.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1334 / max 21.8796, expressed in 53 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
136457	0.1334	53

Top tissues by expression

167 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
buccal mucosa cell	CL:0002336	92.15	gold quality
putamen	UBERON:0001874	77.44	gold quality
epithelium of nasopharynx	UBERON:0001951	75.97	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.48	silver quality
caudate nucleus	UBERON:0001873	73.94	gold quality
nucleus accumbens	UBERON:0001882	70.24	gold quality
cortex of kidney	UBERON:0001225	69.34	gold quality
amygdala	UBERON:0001876	66.90	gold quality
substantia nigra	UBERON:0002038	66.02	gold quality
midbrain	UBERON:0001891	65.60	gold quality
hypothalamus	UBERON:0001898	65.36	gold quality
Brodmann (1909) area 9	UBERON:0013540	65.01	gold quality
oocyte	CL:0000023	64.11	gold quality
ventricular zone	UBERON:0003053	63.67	gold quality
Ammon’s horn	UBERON:0001954	62.83	gold quality
forebrain	UBERON:0001890	62.69	gold quality
right frontal lobe	UBERON:0002810	62.57	gold quality
brain	UBERON:0000955	62.47	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	62.36	gold quality
tibia	UBERON:0000979	62.32	gold quality
secondary oocyte	CL:0000655	62.20	gold quality
cardia of stomach	UBERON:0001162	61.99	gold quality
trabecular bone tissue	UBERON:0002483	61.84	gold quality
pericardium	UBERON:0002407	61.78	gold quality
saphenous vein	UBERON:0007318	61.74	gold quality
coronary artery	UBERON:0001621	61.71	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	61.70	gold quality
nipple	UBERON:0002030	61.67	gold quality
spinal cord	UBERON:0002240	61.65	gold quality
anterior cingulate cortex	UBERON:0009835	61.64	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.47

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.