LINC00471

Summary

LINC00471 (long intergenic non-protein coding RNA 471, HGNC:28668) is a long non-coding RNA gene on chromosome 2q37.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:28668
Approved symbol	LINC00471
Name	long intergenic non-protein coding RNA 471
Location	2q37.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	MGC43122
Ensembl gene	ENSG00000181798
Ensembl biotype	lncRNA
Entrez	151477
RNAcentral	URS000075E41B — lncRNA, 1298 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 55 — 55 lncRNA

ENST00000313064, ENST00000668648, ENST00000750556, ENST00000750557, ENST00000750558, ENST00000750559, ENST00000750560, ENST00000750561, ENST00000750562, ENST00000750563, ENST00000750564, ENST00000750565, ENST00000750566, ENST00000750567, ENST00000750568, ENST00000750569, ENST00000750570, ENST00000750571, ENST00000750572, ENST00000750573, ENST00000750574, ENST00000750575, ENST00000750576, ENST00000750577, ENST00000750578, ENST00000750579, ENST00000750580, ENST00000750581, ENST00000750582, ENST00000750583, ENST00000750584, ENST00000750585, ENST00000750586, ENST00000750587, ENST00000750588, ENST00000750589, ENST00000750590, ENST00000750591, ENST00000750592, ENST00000750593, ENST00000750594, ENST00000750595, ENST00000750596, ENST00000750597, ENST00000750598, ENST00000750599, ENST00000750600, ENST00000750601, ENST00000750602, ENST00000750603, ENST00000750604, ENST00000750605, ENST00000750606, ENST00000750607, ENST00000750608

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000313064 — 3 exons

Exon	Start	End
ENSE00001250937	231513527	231513632
ENSE00004095005	231514097	231514397
ENSE00004095063	231508421	231509343

Expression profiles

Bgee: expression breadth ubiquitous, 155 present calls, max score 82.22.

FANTOM5 (CAGE): breadth broad, TPM avg 1.8230 / max 18.9793, expressed in 893 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
34524	1.8230	893

Top tissues by expression

241 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	82.22	gold quality
buccal mucosa cell	CL:0002336	81.11	silver quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.23	gold quality
bone marrow cell	CL:0002092	69.12	silver quality
calcaneal tendon	UBERON:0003701	63.44	gold quality
islet of Langerhans	UBERON:0000006	62.35	gold quality
ganglionic eminence	UBERON:0004023	62.12	gold quality
ventricular zone	UBERON:0003053	61.46	gold quality
cortical plate	UBERON:0005343	61.04	gold quality
muscle of leg	UBERON:0001383	58.43	gold quality
hindlimb stylopod muscle	UBERON:0004252	58.06	gold quality
prefrontal cortex	UBERON:0000451	57.97	gold quality
stromal cell of endometrium	CL:0002255	57.81	gold quality
gastrocnemius	UBERON:0001388	57.67	gold quality
pancreas	UBERON:0001264	57.13	gold quality
oviduct epithelium	UBERON:0004804	57.01	silver quality
sural nerve	UBERON:0015488	56.48	silver quality
right atrium auricular region	UBERON:0006631	56.05	gold quality
cardiac atrium	UBERON:0002081	55.63	gold quality
ovary	UBERON:0000992	55.57	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	55.46	gold quality
right ovary	UBERON:0002118	55.35	gold quality
leukocyte	CL:0000738	55.28	silver quality
right uterine tube	UBERON:0001302	55.16	gold quality
left ovary	UBERON:0002119	55.13	gold quality
body of pancreas	UBERON:0001150	54.96	gold quality
adenohypophysis	UBERON:0002196	54.82	gold quality
tendon	UBERON:0000043	54.64	gold quality
testis	UBERON:0000473	54.61	gold quality
heart left ventricle	UBERON:0002084	54.25	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.66

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.