LINC00475

Summary

LINC00475 (long intergenic non-protein coding RNA 475, HGNC:23569) is a unprocessed pseudogene on chromosome 9q22.31.

At a glance

• Gene type: non-coding (transcribed_unprocessed_pseudogene) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:23569
Approved symbol	LINC00475
Name	long intergenic non-protein coding RNA 475
Location	9q22.31
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000225511
Ensembl biotype	transcribed_unprocessed_pseudogene
Entrez	158314
RNAcentral	URS000075E2BA — lncRNA, 2000 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 transcribed_unprocessed_pseudogene

ENST00000643592

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000643592 — 1 exons

Exon	Start	End
ENSE00003817845	92141438	92141650

Expression profiles

Bgee: expression breadth ubiquitous, 201 present calls, max score 96.36.

FANTOM5 (CAGE): breadth broad, TPM avg 0.9996 / max 37.2401, expressed in 266 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
97343	0.5816	148
97342	0.4181	177

Top tissues by expression

237 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
kidney epithelium	UBERON:0004819	96.36	silver quality
upper arm skin	UBERON:0004263	93.11	silver quality
nasal cavity epithelium	UBERON:0005384	90.06	silver quality
cardiac muscle of right atrium	UBERON:0003379	89.95	gold quality
right uterine tube	UBERON:0001302	88.93	gold quality
vena cava	UBERON:0004087	88.36	silver quality
right hemisphere of cerebellum	UBERON:0014890	88.14	gold quality
cerebellar hemisphere	UBERON:0002245	87.73	gold quality
cerebellar cortex	UBERON:0002129	87.53	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	87.32	silver quality
myocardium	UBERON:0002349	87.29	silver quality
cerebellar vermis	UBERON:0004720	86.75	silver quality
tendon of biceps brachii	UBERON:0008188	86.69	gold quality
cerebellum	UBERON:0002037	86.57	gold quality
heart right ventricle	UBERON:0002080	86.47	gold quality
body of tongue	UBERON:0011876	85.88	gold quality
lateral nuclear group of thalamus	UBERON:0002736	84.51	gold quality
vastus lateralis	UBERON:0001379	84.31	silver quality
pons	UBERON:0000988	83.66	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	83.66	silver quality
quadriceps femoris	UBERON:0001377	83.33	silver quality
right adrenal gland cortex	UBERON:0035827	83.33	gold quality
subthalamic nucleus	UBERON:0001906	82.65	silver quality
dorsal plus ventral thalamus	UBERON:0001897	82.06	silver quality
right adrenal gland	UBERON:0001233	81.98	gold quality
tongue	UBERON:0001723	81.78	silver quality
body of uterus	UBERON:0009853	81.68	gold quality
biceps brachii	UBERON:0001507	81.59	silver quality
adrenal cortex	UBERON:0001235	81.03	gold quality
pericardium	UBERON:0002407	81.00	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.33

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.