LINC00484

Summary

LINC00484 (long intergenic non-protein coding RNA 484, HGNC:27862) is a long non-coding RNA gene on chromosome 9q22.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27862
Approved symbol	LINC00484
Name	long intergenic non-protein coding RNA 484
Location	9q22.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000235641
Ensembl biotype	lncRNA
Entrez	100129347
RNAcentral	URS000025B3F2 — lncRNA, 454 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 30 — 30 lncRNA

ENST00000414768, ENST00000421595, ENST00000423719, ENST00000437389, ENST00000439438, ENST00000588550, ENST00000608240, ENST00000609752, ENST00000659376, ENST00000668360, ENST00000668856, ENST00000815010, ENST00000815011, ENST00000815012, ENST00000815013, ENST00000815014, ENST00000815015, ENST00000815016, ENST00000815017, ENST00000815018, ENST00000815019, ENST00000815020, ENST00000815021, ENST00000815022, ENST00000815023, ENST00000815024, ENST00000815025, ENST00000815026, ENST00000815027, ENST00000815028

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000414768 — 4 exons

Exon	Start	End
ENSE00001616888	91181648	91181795
ENSE00001617318	91182469	91182717
ENSE00001702835	91182266	91182380
ENSE00001760623	91170673	91170721

Expression profiles

Bgee: expression breadth ubiquitous, 125 present calls, max score 71.84.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2773 / max 27.0525, expressed in 115 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
97328	0.1939	76
97331	0.0834	34

Top tissues by expression

125 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	71.84	gold quality
sural nerve	UBERON:0015488	71.44	gold quality
granulocyte	CL:0000094	69.83	gold quality
cortical plate	UBERON:0005343	67.60	gold quality
hindlimb stylopod muscle	UBERON:0004252	67.27	gold quality
skeletal muscle tissue	UBERON:0001134	65.04	gold quality
bone marrow cell	CL:0002092	64.42	silver quality
ganglionic eminence	UBERON:0004023	62.80	gold quality
bone marrow	UBERON:0002371	61.38	gold quality
tonsil	UBERON:0002372	60.26	silver quality
liver	UBERON:0002107	58.88	gold quality
blood	UBERON:0000178	57.90	gold quality
leukocyte	CL:0000738	56.86	gold quality
smooth muscle tissue	UBERON:0001135	56.41	gold quality
calcaneal tendon	UBERON:0003701	54.47	silver quality
tibial nerve	UBERON:0001323	54.02	gold quality
right atrium auricular region	UBERON:0006631	53.96	gold quality
ovary	UBERON:0000992	53.85	gold quality
muscle of leg	UBERON:0001383	53.33	gold quality
prefrontal cortex	UBERON:0000451	53.32	gold quality
left ovary	UBERON:0002119	53.25	gold quality
corpus callosum	UBERON:0002336	53.16	gold quality
vermiform appendix	UBERON:0001154	52.99	gold quality
cerebellum	UBERON:0002037	52.97	gold quality
gall bladder	UBERON:0002110	52.92	gold quality
cerebellar cortex	UBERON:0002129	52.90	gold quality
cerebellar hemisphere	UBERON:0002245	52.73	gold quality
right hemisphere of cerebellum	UBERON:0014890	52.72	gold quality
islet of Langerhans	UBERON:0000006	52.56	gold quality
urinary bladder	UBERON:0001255	52.50	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.93

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.