LINC00533

Summary

LINC00533 (long intergenic non-protein coding RNA 533, HGNC:18690) is a long non-coding RNA gene on chromosome 6p22.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:18690
Approved symbol	LINC00533
Name	long intergenic non-protein coding RNA 533
Location	6p22.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	bA373N24.1, C6orf39
Ensembl gene	ENSG00000235570
Ensembl biotype	lncRNA
Entrez	387055
RNAcentral	URS0000A7700A — lncRNA, 581 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000456103, ENST00000806405, ENST00000806406, ENST00000806407, ENST00000806408, ENST00000806409, ENST00000806410, ENST00000806411

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000456103 — 3 exons

Exon	Start	End
ENSE00001650610	28648896	28649066
ENSE00001746340	28648286	28648651
ENSE00004199438	28654432	28654572

Expression profiles

Bgee: expression breadth broad, 57 present calls, max score 79.46.

Top tissues by expression

57 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.46	gold quality
placenta	UBERON:0001987	56.41	gold quality
left testis	UBERON:0004533	53.05	gold quality
testis	UBERON:0000473	52.10	gold quality
prefrontal cortex	UBERON:0000451	52.02	gold quality
right testis	UBERON:0004534	50.78	gold quality
left ovary	UBERON:0002119	50.18	gold quality
superior frontal gyrus	UBERON:0002661	49.76	gold quality
adult mammalian kidney	UBERON:0000082	49.43	silver quality
cortex of kidney	UBERON:0001225	48.83	gold quality
tibial nerve	UBERON:0001323	48.42	gold quality
multicellular organism	UBERON:0000468	48.28	gold quality
heart left ventricle	UBERON:0002084	48.04	gold quality
ovary	UBERON:0000992	47.77	gold quality
nucleus accumbens	UBERON:0001882	47.22	gold quality
heart	UBERON:0000948	46.97	gold quality
gastrocnemius	UBERON:0001388	46.66	silver quality
blood	UBERON:0000178	46.04	silver quality
islet of Langerhans	UBERON:0000006	45.95	gold quality
cerebellum	UBERON:0002037	45.86	silver quality
cerebellar hemisphere	UBERON:0002245	45.59	silver quality
right atrium auricular region	UBERON:0006631	45.42	gold quality
right hemisphere of cerebellum	UBERON:0014890	45.32	silver quality
skin of leg	UBERON:0001511	44.41	gold quality
cerebral cortex	UBERON:0000956	44.30	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	44.25	gold quality
adrenal gland	UBERON:0002369	43.97	gold quality
prostate gland	UBERON:0002367	43.68	gold quality
left lobe of thyroid gland	UBERON:0001120	43.65	gold quality
endocervix	UBERON:0000458	43.60	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.15

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.