LINC00547

Summary

LINC00547 (long intergenic non-protein coding RNA 547, HGNC:43682) is a long non-coding RNA gene on chromosome 13q13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:43682
Approved symbol	LINC00547
Name	long intergenic non-protein coding RNA 547
Location	13q13.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	FLJ34747
Ensembl gene	ENSG00000275226
Ensembl biotype	lncRNA
Entrez	400121
RNAcentral	URS000075D57F — lncRNA, 3314 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000612438

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000612438 — 5 exons

Exon	Start	End
ENSE00003730328	37547834	37547904
ENSE00003734038	37535815	37535851
ENSE00003734151	37548096	37548240
ENSE00003740564	37548501	37551536
ENSE00003742854	37534940	37534964

Expression profiles

Bgee: expression breadth broad, 23 present calls, max score 75.43.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0434 / max 18.8664, expressed in 14 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
134790	0.0434	14

Top tissues by expression

23 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.43	gold quality
liver	UBERON:0002107	64.34	silver quality
sural nerve	UBERON:0015488	62.96	silver quality
ventricular zone	UBERON:0003053	58.44	silver quality
islet of Langerhans	UBERON:0000006	56.52	gold quality
ganglionic eminence	UBERON:0004023	54.46	silver quality
prefrontal cortex	UBERON:0000451	52.75	silver quality
blood	UBERON:0000178	52.31	silver quality
monocyte	CL:0000576	49.75	silver quality
saliva-secreting gland	UBERON:0001044	49.42	silver quality
lung	UBERON:0002048	49.06	silver quality
esophagus	UBERON:0001043	47.41	silver quality
gastrocnemius	UBERON:0001388	45.59	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	44.68	silver quality
heart	UBERON:0000948	44.11	silver quality
adipose tissue	UBERON:0001013	43.39	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	43.10	silver quality
subcutaneous adipose tissue	UBERON:0002190	42.27	silver quality
thoracic aorta	UBERON:0001515	41.66	silver quality
heart left ventricle	UBERON:0002084	40.81	silver quality
ascending aorta	UBERON:0001496	40.24	silver quality
tibial artery	UBERON:0007610	39.03	silver quality
esophagus mucosa	UBERON:0002469	36.51	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.61

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.