LINC00552

Summary

LINC00552 (long intergenic non-protein coding RNA 552, HGNC:43692) is a long non-coding RNA gene on chromosome 13q34.

At a glance

• Gene type: non-coding (TEC) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:43692
Approved symbol	LINC00552
Name	long intergenic non-protein coding RNA 552
Location	13q34
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000279770
Ensembl biotype	TEC
Entrez	100130386
RNAcentral	URS000075D505 — lncRNA, 2579 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 TEC

ENST00000625151

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000625151 — 1 exons

Exon	Start	End
ENSE00003758208	113748511	113751089

Expression profiles

Bgee: expression breadth broad, 65 present calls, max score 81.73.

Top tissues by expression

65 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right testis	UBERON:0004534	81.73	gold quality
left testis	UBERON:0004533	81.21	gold quality
testis	UBERON:0000473	80.39	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.28	gold quality
right lobe of liver	UBERON:0001114	59.16	gold quality
ganglionic eminence	UBERON:0004023	54.93	silver quality
liver	UBERON:0002107	53.55	gold quality
multicellular organism	UBERON:0000468	52.74	gold quality
tibial nerve	UBERON:0001323	52.66	gold quality
adult mammalian kidney	UBERON:0000082	50.21	gold quality
primary visual cortex	UBERON:0002436	48.53	silver quality
duodenum	UBERON:0002114	47.51	silver quality
gastrocnemius	UBERON:0001388	47.45	gold quality
cortex of kidney	UBERON:0001225	47.25	silver quality
prefrontal cortex	UBERON:0000451	47.03	gold quality
superior frontal gyrus	UBERON:0002661	46.92	silver quality
Ammon’s horn	UBERON:0001954	46.39	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	46.29	gold quality
cerebral cortex	UBERON:0000956	46.02	gold quality
anterior cingulate cortex	UBERON:0009835	45.75	gold quality
Brodmann (1909) area 9	UBERON:0013540	45.67	silver quality
frontal cortex	UBERON:0001870	45.46	gold quality
blood	UBERON:0000178	44.83	gold quality
gall bladder	UBERON:0002110	44.82	silver quality
right frontal lobe	UBERON:0002810	44.70	gold quality
subcutaneous adipose tissue	UBERON:0002190	44.57	gold quality
brain	UBERON:0000955	44.20	gold quality
heart left ventricle	UBERON:0002084	43.75	silver quality
small intestine	UBERON:0002108	43.60	silver quality
descending thoracic aorta	UBERON:0002345	43.27	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.82

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.