LINC00554

Summary

LINC00554 (long intergenic non-protein coding RNA 554, HGNC:43697) is a long non-coding RNA gene on chromosome 13q32.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:43697
Approved symbol	LINC00554
Name	long intergenic non-protein coding RNA 554
Location	13q32.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	lncZic2
Ensembl gene	ENSG00000260738
Ensembl biotype	lncRNA
Entrez	100861542
RNAcentral	URS0000585BFE — lncRNA, 3011 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000564841

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000564841 — 1 exons

Exon	Start	End
ENSE00002577538	99994899	99997909

Expression profiles

Bgee: expression breadth tissue_specific, 7 present calls, max score 47.55.

Top tissues by expression

7 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
kidney	UBERON:0002113	47.55	silver quality
esophagus mucosa	UBERON:0002469	43.98	gold quality
omental fat pad	UBERON:0010414	41.56	silver quality
myometrium	UBERON:0001296	41.41	silver quality
testis	UBERON:0000473	30.64	silver quality
right testis	UBERON:0004534	30.45	silver quality
left testis	UBERON:0004533	30.19	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.31

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.