LINC00556

Summary

LINC00556 (long intergenic non-protein coding RNA 556, HGNC:43700) is a long non-coding RNA gene on chromosome 13q12.11.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:43700
Approved symbol	LINC00556
Name	long intergenic non-protein coding RNA 556
Location	13q12.11
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000260131
Ensembl biotype	lncRNA
Entrez	100861551
RNAcentral	URS00000FBCFF — lncRNA, 412 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000569603

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000569603 — 1 exons

Exon	Start	End
ENSE00002586910	20181531	20181942

Expression profiles

Bgee: expression breadth ubiquitous, 116 present calls, max score 80.72.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0384 / max 12.6727, expressed in 12 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
134303	0.0384	12

Top tissues by expression

214 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.72	silver quality
ganglionic eminence	UBERON:0004023	68.51	gold quality
sural nerve	UBERON:0015488	63.00	gold quality
calcaneal tendon	UBERON:0003701	61.92	gold quality
monocyte	CL:0000576	61.66	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	58.54	gold quality
islet of Langerhans	UBERON:0000006	57.84	gold quality
adrenal tissue	UBERON:0018303	55.02	gold quality
descending thoracic aorta	UBERON:0002345	53.11	gold quality
left adrenal gland cortex	UBERON:0035825	52.84	gold quality
esophagus mucosa	UBERON:0002469	52.20	gold quality
muscle of leg	UBERON:0001383	52.04	gold quality
right lobe of liver	UBERON:0001114	51.57	gold quality
gastrocnemius	UBERON:0001388	51.20	gold quality
esophagus	UBERON:0001043	51.12	gold quality
left adrenal gland	UBERON:0001234	51.03	gold quality
adrenal gland	UBERON:0002369	49.77	gold quality
right lung	UBERON:0002167	49.65	gold quality
pancreas	UBERON:0001264	48.87	gold quality
adrenal cortex	UBERON:0001235	48.52	gold quality
tibial artery	UBERON:0007610	48.26	gold quality
right adrenal gland	UBERON:0001233	48.17	gold quality
skin of abdomen	UBERON:0001416	48.07	gold quality
body of pancreas	UBERON:0001150	47.77	gold quality
ectocervix	UBERON:0012249	47.53	gold quality
skin of leg	UBERON:0001511	47.39	gold quality
omental fat pad	UBERON:0010414	47.24	gold quality
right coronary artery	UBERON:0001625	47.22	gold quality
peritoneum	UBERON:0002358	47.19	gold quality
aorta	UBERON:0000947	47.09	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.65

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.