LINC00558

Summary

LINC00558 (long intergenic non-protein coding RNA 558, HGNC:43702) is a long non-coding RNA gene on chromosome 13q14.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:43702
Approved symbol	LINC00558
Name	long intergenic non-protein coding RNA 558
Location	13q14.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000261517
Ensembl biotype	lncRNA
Entrez	100861552
RNAcentral	URS000075E4AB — lncRNA, 3175 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000569422, ENST00000655355, ENST00000663173, ENST00000666941

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000569422 — 6 exons

Exon	Start	End
ENSE00002588909	53873452	53876119
ENSE00002595617	53870465	53870527
ENSE00002604958	53815419	53815493
ENSE00002610665	53838739	53838789
ENSE00002616154	53844345	53844522
ENSE00002620773	53840683	53840810

Expression profiles

Bgee: expression breadth broad, 23 present calls, max score 54.85.

Top tissues by expression

167 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
monocyte	CL:0000576	54.85	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	53.19	gold quality
lower esophagus muscularis layer	UBERON:0035833	50.70	gold quality
Brodmann (1909) area 9	UBERON:0013540	50.40	gold quality
right testis	UBERON:0004534	46.61	gold quality
left testis	UBERON:0004533	45.99	gold quality
hindlimb stylopod muscle	UBERON:0004252	45.45	silver quality
testis	UBERON:0000473	45.39	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	45.18	silver quality
pancreas	UBERON:0001264	44.60	gold quality
upper lobe of lung	UBERON:0008948	44.28	silver quality
stomach	UBERON:0000945	43.92	gold quality
small intestine	UBERON:0002108	43.84	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
secondary oocyte	CL:0000655	42.57	gold quality
cortex of kidney	UBERON:0001225	42.39	gold quality
blood	UBERON:0000178	42.13	gold quality
heart left ventricle	UBERON:0002084	41.97	gold quality
vastus lateralis	UBERON:0001379	41.41	gold quality
quadriceps femoris	UBERON:0001377	41.37	gold quality
superficial temporal artery	UBERON:0001614	41.33	gold quality
body of stomach	UBERON:0001161	41.18	silver quality
cardiac ventricle	UBERON:0002082	41.15	gold quality
bone marrow	UBERON:0002371	41.14	gold quality
skeletal muscle tissue	UBERON:0001134	41.10	gold quality
palpebral conjunctiva	UBERON:0001812	41.10	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	41.00	silver quality
anatomical system	UBERON:0000467	40.99	gold quality
mucosa of paranasal sinus	UBERON:0005030	40.98	gold quality
multicellular organism	UBERON:0000468	40.95	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.44

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.