LINC00559

Summary

LINC00559 (long intergenic non-protein coding RNA 559, HGNC:43703) is a long non-coding RNA gene on chromosome 13q31.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:43703
Approved symbol	LINC00559
Name	long intergenic non-protein coding RNA 559
Location	13q31.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000261446
Ensembl biotype	lncRNA
Entrez	100874187
RNAcentral	URS000075A404 — lncRNA, 3875 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000569476, ENST00000647679, ENST00000653351, ENST00000654320, ENST00000660628, ENST00000662619

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000569476 — 6 exons

Exon	Start	End
ENSE00002586250	90060247	90060612
ENSE00002597764	90118773	90119719
ENSE00002603644	90066728	90066810
ENSE00002616051	90105947	90106202
ENSE00002617673	90106583	90108661
ENSE00002620867	90079127	90079262

Expression profiles

Bgee: expression breadth broad, 21 present calls, max score 80.17.

Top tissues by expression

169 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.17	gold quality
buccal mucosa cell	CL:0002336	78.46	gold quality
tendon of biceps brachii	UBERON:0008188	64.45	gold quality
tendon	UBERON:0000043	57.59	gold quality
oviduct epithelium	UBERON:0004804	56.40	silver quality
sperm	CL:0000019	55.49	gold quality
tibial artery	UBERON:0007610	54.81	gold quality
testis	UBERON:0000473	53.82	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	53.42	gold quality
right testis	UBERON:0004534	53.38	gold quality
left testis	UBERON:0004533	52.93	gold quality
fallopian tube	UBERON:0003889	52.90	silver quality
upper lobe of lung	UBERON:0008948	45.33	silver quality
lower lobe of lung	UBERON:0008949	45.16	silver quality
gall bladder	UBERON:0002110	44.95	silver quality
monocyte	CL:0000576	44.93	silver quality
aorta	UBERON:0000947	44.88	silver quality
gastrocnemius	UBERON:0001388	44.44	gold quality
upper leg skin	UBERON:0004262	43.61	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
amniotic fluid	UBERON:0000173	42.98	gold quality
secondary oocyte	CL:0000655	42.57	gold quality
vastus lateralis	UBERON:0001379	42.55	gold quality
quadriceps femoris	UBERON:0001377	42.49	gold quality
body of stomach	UBERON:0001161	42.45	silver quality
substantia nigra pars compacta	UBERON:0001965	42.45	gold quality
anatomical system	UBERON:0000467	42.41	gold quality
material anatomical entity	UBERON:0000465	42.32	gold quality
multicellular organism	UBERON:0000468	42.29	gold quality
heart left ventricle	UBERON:0002084	41.97	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.60

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.