LINC00561

Summary

LINC00561 (long intergenic non-protein coding RNA 561, HGNC:43705) is a long non-coding RNA gene on chromosome 13q22.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:43705
Approved symbol	LINC00561
Name	long intergenic non-protein coding RNA 561
Location	13q22.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000261206
Ensembl biotype	lncRNA
Entrez	100861545
RNAcentral	URS0000BC44F3 — lncRNA, 2735 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000565815

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000565815 — 1 exons

Exon	Start	End
ENSE00002585323	75932395	75935132

Expression profiles

Bgee: expression breadth broad, 14 present calls, max score 52.58.

Top tissues by expression

14 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
urinary bladder	UBERON:0001255	52.58	silver quality
gall bladder	UBERON:0002110	48.18	gold quality
body of stomach	UBERON:0001161	45.35	gold quality
vermiform appendix	UBERON:0001154	45.32	silver quality
heart left ventricle	UBERON:0002084	44.29	silver quality
esophagogastric junction muscularis propria	UBERON:0035841	43.49	silver quality
heart	UBERON:0000948	42.98	silver quality
colon	UBERON:0001155	42.33	silver quality
lower esophagus muscularis layer	UBERON:0035833	42.31	gold quality
esophagus	UBERON:0001043	42.06	gold quality
right atrium auricular region	UBERON:0006631	41.91	silver quality
esophagus mucosa	UBERON:0002469	38.75	silver quality
endometrium	UBERON:0001295	38.05	silver quality
small intestine Peyer’s patch	UBERON:0003454	36.44	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.46

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.