LINC00562

Summary

LINC00562 (long intergenic non-protein coding RNA 562, HGNC:43706) is a long non-coding RNA gene on chromosome 13q14.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:43706
Approved symbol	LINC00562
Name	long intergenic non-protein coding RNA 562
Location	13q14.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000260388
Ensembl biotype	lncRNA
Entrez	100861549
RNAcentral	URS00007841B2 — lncRNA, 2470 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000566385

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000566385 — 1 exons

Exon	Start	End
ENSE00002595049	47930153	47932622

Expression profiles

Bgee: expression breadth ubiquitous, 128 present calls, max score 79.64.

Top tissues by expression

128 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	79.64	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.37	silver quality
sural nerve	UBERON:0015488	75.99	silver quality
colonic epithelium	UBERON:0000397	65.64	silver quality
cortical plate	UBERON:0005343	59.94	silver quality
skeletal muscle tissue	UBERON:0001134	59.29	gold quality
hindlimb stylopod muscle	UBERON:0004252	58.86	gold quality
ventricular zone	UBERON:0003053	58.61	silver quality
ganglionic eminence	UBERON:0004023	57.88	silver quality
cerebellar cortex	UBERON:0002129	57.58	gold quality
cerebellum	UBERON:0002037	57.55	gold quality
cerebellar hemisphere	UBERON:0002245	57.49	gold quality
right hemisphere of cerebellum	UBERON:0014890	55.78	gold quality
primary visual cortex	UBERON:0002436	54.81	gold quality
leukocyte	CL:0000738	54.34	silver quality
monocyte	CL:0000576	54.33	silver quality
granulocyte	CL:0000094	53.23	gold quality
duodenum	UBERON:0002114	53.18	gold quality
superior frontal gyrus	UBERON:0002661	52.77	gold quality
prefrontal cortex	UBERON:0000451	52.57	gold quality
testis	UBERON:0000473	51.95	silver quality
muscle of leg	UBERON:0001383	51.95	gold quality
endometrium	UBERON:0001295	51.88	silver quality
gastrocnemius	UBERON:0001388	51.23	gold quality
lymph node	UBERON:0000029	51.10	gold quality
blood	UBERON:0000178	50.27	silver quality
bone marrow	UBERON:0002371	50.11	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	49.81	gold quality
heart left ventricle	UBERON:0002084	49.42	gold quality
frontal cortex	UBERON:0001870	49.28	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.53

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.