LINC00563

Summary

LINC00563 (long intergenic non-protein coding RNA 563, HGNC:43707) is a long non-coding RNA gene on chromosome 13q14.13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:43707
Approved symbol	LINC00563
Name	long intergenic non-protein coding RNA 563
Location	13q14.13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000261097
Ensembl biotype	lncRNA
Entrez	100861554
RNAcentral	URS000075A8D1 — lncRNA, 1418 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000566370, ENST00000826673, ENST00000826674, ENST00000826675, ENST00000826676, ENST00000826677

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000566370 — 1 exons

Exon	Start	End
ENSE00002618949	46296445	46297844

Expression profiles

Bgee: expression breadth broad, 36 present calls, max score 83.58.

Top tissues by expression

211 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	83.58	gold quality
cervix squamous epithelium	UBERON:0006922	76.76	gold quality
pancreatic ductal cell	CL:0002079	63.98	silver quality
bone marrow cell	CL:0002092	63.45	gold quality
hindlimb stylopod muscle	UBERON:0004252	62.01	gold quality
tongue squamous epithelium	UBERON:0006919	61.89	gold quality
endothelial cell	CL:0000115	61.31	gold quality
ileal mucosa	UBERON:0000331	57.89	silver quality
uterine cervix	UBERON:0000002	57.03	gold quality
cervix epithelium	UBERON:0004801	56.54	gold quality
periodontal ligament	UBERON:0008266	56.50	gold quality
cingulate cortex	UBERON:0003027	56.04	gold quality
sperm	CL:0000019	54.79	gold quality
male germ cell	CL:0000015	54.67	gold quality
leukocyte	CL:0000738	53.56	gold quality
endometrium epithelium	UBERON:0004811	53.47	gold quality
mononuclear cell	CL:0000842	53.05	gold quality
oviduct epithelium	UBERON:0004804	52.81	gold quality
monocyte	CL:0000576	52.72	gold quality
deltoid	UBERON:0001476	52.68	gold quality
right lobe of liver	UBERON:0001114	52.34	gold quality
epithelial cell of pancreas	CL:0000083	51.89	gold quality
anterior cingulate cortex	UBERON:0009835	51.48	gold quality
fallopian tube	UBERON:0003889	50.88	gold quality
prefrontal cortex	UBERON:0000451	50.85	silver quality
metanephros	UBERON:0000081	50.79	gold quality
cerebellar hemisphere	UBERON:0002245	50.65	gold quality
quadriceps femoris	UBERON:0001377	50.58	gold quality
cranial nerve II	UBERON:0000941	50.49	silver quality
frontal pole	UBERON:0002795	50.41	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.48

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.