LINC00564

Summary

LINC00564 (long intergenic non-protein coding RNA 564, HGNC:43708) is a long non-coding RNA gene on chromosome 13q31.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:43708
Approved symbol	LINC00564
Name	long intergenic non-protein coding RNA 564
Location	13q31.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000260094
Ensembl biotype	lncRNA
Entrez	100861546
RNAcentral	URS00002A07DF — lncRNA, 1119 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000567258, ENST00000752723

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000567258 — 1 exons

Exon	Start	End
ENSE00004099121	81225865	81226987

Expression profiles

Bgee: expression breadth broad, 86 present calls, max score 82.14.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0169 / max 4.7525, expressed in 12 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
137750	0.0169	12

Top tissues by expression

86 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.14	gold quality
hindlimb stylopod muscle	UBERON:0004252	56.10	silver quality
blood	UBERON:0000178	54.08	gold quality
leukocyte	CL:0000738	53.65	silver quality
anterior cingulate cortex	UBERON:0009835	52.46	gold quality
testis	UBERON:0000473	50.93	gold quality
left testis	UBERON:0004533	50.31	gold quality
liver	UBERON:0002107	49.99	silver quality
lymph node	UBERON:0000029	49.93	gold quality
muscle of leg	UBERON:0001383	49.70	gold quality
heart left ventricle	UBERON:0002084	49.05	gold quality
substantia nigra	UBERON:0002038	48.99	gold quality
right testis	UBERON:0004534	48.54	gold quality
smooth muscle tissue	UBERON:0001135	48.47	gold quality
heart	UBERON:0000948	47.97	gold quality
muscle layer of sigmoid colon	UBERON:0035805	47.77	gold quality
urinary bladder	UBERON:0001255	47.42	gold quality
islet of Langerhans	UBERON:0000006	47.09	silver quality
descending thoracic aorta	UBERON:0002345	47.05	gold quality
endometrium	UBERON:0001295	46.83	silver quality
body of stomach	UBERON:0001161	46.75	gold quality
gastrocnemius	UBERON:0001388	46.74	silver quality
tibial artery	UBERON:0007610	46.66	gold quality
popliteal artery	UBERON:0002250	46.63	gold quality
gall bladder	UBERON:0002110	46.57	gold quality
colon	UBERON:0001155	46.45	gold quality
multicellular organism	UBERON:0000468	46.40	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	46.30	gold quality
right atrium auricular region	UBERON:0006631	46.24	gold quality
lower esophagus	UBERON:0013473	46.17	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.15

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.