LINC00570

Summary

LINC00570 (long intergenic non-protein coding RNA 570, HGNC:43717) is a long non-coding RNA gene on chromosome 2p25.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:43717
Approved symbol	LINC00570
Name	long intergenic non-protein coding RNA 570
Location	2p25.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	ncRNA-a5
Ensembl gene	ENSG00000224177
Ensembl biotype	lncRNA
Entrez	100874055
RNAcentral	URS000075A68D — lncRNA, 1340 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 18 — 18 lncRNA

ENST00000417473, ENST00000432665, ENST00000437795, ENST00000453100, ENST00000658552, ENST00000661605, ENST00000666797, ENST00000668851, ENST00000670478, ENST00000675665, ENST00000746799, ENST00000747024, ENST00000747025, ENST00000747026, ENST00000806238, ENST00000806239, ENST00000806240, ENST00000806241

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000417473 — 3 exons

Exon	Start	End
ENSE00001674027	11400372	11400457
ENSE00004088534	11402025	11403077
ENSE00004088535	11393961	11394171

Expression profiles

Bgee: expression breadth ubiquitous, 114 present calls, max score 85.70.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1386 / max 41.4587, expressed in 15 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
202083	0.1386	15

Top tissues by expression

117 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
quadriceps femoris	UBERON:0001377	85.70	gold quality
cerebellar vermis	UBERON:0004720	83.56	gold quality
blood	UBERON:0000178	82.35	gold quality
bone marrow	UBERON:0002371	76.10	gold quality
sural nerve	UBERON:0015488	75.82	gold quality
monocyte	CL:0000576	74.99	gold quality
bone marrow cell	CL:0002092	73.03	gold quality
colonic epithelium	UBERON:0000397	66.84	silver quality
duodenum	UBERON:0002114	66.50	gold quality
mucosa of transverse colon	UBERON:0004991	64.27	gold quality
putamen	UBERON:0001874	62.99	gold quality
caudate nucleus	UBERON:0001873	62.14	gold quality
nucleus accumbens	UBERON:0001882	60.55	gold quality
thymus	UBERON:0002370	60.47	silver quality
hindlimb stylopod muscle	UBERON:0004252	58.42	gold quality
liver	UBERON:0002107	57.53	gold quality
skeletal muscle tissue	UBERON:0001134	57.01	silver quality
rectum	UBERON:0001052	56.86	gold quality
placenta	UBERON:0001987	56.80	gold quality
small intestine	UBERON:0002108	56.69	gold quality
tonsil	UBERON:0002372	56.65	gold quality
right lobe of liver	UBERON:0001114	56.48	gold quality
vermiform appendix	UBERON:0001154	55.47	gold quality
superior frontal gyrus	UBERON:0002661	55.44	gold quality
small intestine Peyer’s patch	UBERON:0003454	55.38	gold quality
prefrontal cortex	UBERON:0000451	55.32	gold quality
gall bladder	UBERON:0002110	55.28	gold quality
intestine	UBERON:0000160	53.62	gold quality
multicellular organism	UBERON:0000468	53.39	gold quality
brain	UBERON:0000955	53.25	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.53

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.