LINC00571

Summary

LINC00571 (long intergenic non-protein coding RNA 571, HGNC:43721) is a long non-coding RNA gene on chromosome 13q13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:43721
Approved symbol	LINC00571
Name	long intergenic non-protein coding RNA 571
Location	13q13.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000223685
Ensembl biotype	lncRNA
Entrez	100874188
RNAcentral	URS000002CA7E — lncRNA, 521 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 15 — 15 lncRNA

ENST00000434565, ENST00000451826, ENST00000454060, ENST00000700975, ENST00000839422, ENST00000839423, ENST00000839424, ENST00000839425, ENST00000839426, ENST00000839427, ENST00000839428, ENST00000839429, ENST00000839430, ENST00000839431, ENST00000839432

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000434565 — 6 exons

Exon	Start	End
ENSE00001621212	38061396	38061453
ENSE00001676082	38143132	38143232
ENSE00001679135	38062149	38062234
ENSE00001713768	38093426	38093548
ENSE00001776463	38089573	38089660
ENSE00001791766	38050817	38050881

Expression profiles

Bgee: expression breadth ubiquitous, 129 present calls, max score 77.88.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 2.7286 / max 86.8723, expressed in 1195 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
136867	2.7286	1195

Top tissues by expression

129 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.88	silver quality
bone marrow cell	CL:0002092	76.44	gold quality
colonic epithelium	UBERON:0000397	75.82	gold quality
bone marrow	UBERON:0002371	68.49	gold quality
corpus callosum	UBERON:0002336	66.95	gold quality
islet of Langerhans	UBERON:0000006	66.89	gold quality
tonsil	UBERON:0002372	65.94	gold quality
calcaneal tendon	UBERON:0003701	65.81	gold quality
skeletal muscle tissue	UBERON:0001134	65.13	gold quality
sural nerve	UBERON:0015488	63.62	silver quality
pancreas	UBERON:0001264	63.39	gold quality
adrenal tissue	UBERON:0018303	63.21	gold quality
ganglionic eminence	UBERON:0004023	62.86	gold quality
kidney	UBERON:0002113	62.59	gold quality
right atrium auricular region	UBERON:0006631	62.19	gold quality
adult mammalian kidney	UBERON:0000082	61.78	gold quality
apex of heart	UBERON:0002098	61.74	gold quality
heart	UBERON:0000948	61.40	gold quality
heart left ventricle	UBERON:0002084	61.24	gold quality
liver	UBERON:0002107	61.19	gold quality
body of pancreas	UBERON:0001150	61.12	gold quality
ventricular zone	UBERON:0003053	60.81	gold quality
hindlimb stylopod muscle	UBERON:0004252	60.80	gold quality
cortex of kidney	UBERON:0001225	60.79	gold quality
thyroid gland	UBERON:0002046	60.59	gold quality
left lobe of thyroid gland	UBERON:0001120	60.30	gold quality
placenta	UBERON:0001987	60.19	gold quality
metanephros cortex	UBERON:0010533	60.02	gold quality
endometrium	UBERON:0001295	58.92	gold quality
gall bladder	UBERON:0002110	58.55	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.00

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.