LINC00603

Summary

LINC00603 (long intergenic non-protein coding RNA 603, HGNC:43918) is a long non-coding RNA gene on chromosome 5p13.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:43918
Approved symbol	LINC00603
Name	long intergenic non-protein coding RNA 603
Location	5p13.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250048
Ensembl biotype	lncRNA
Entrez	102467077
RNAcentral	URS0000385F6A — lncRNA, 562 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000507027, ENST00000638070

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000507027 — 4 exons

Exon	Start	End
ENSE00002056173	40052949	40053324
ENSE00002064614	40052290	40052476
ENSE00003795156	40010912	40011010
ENSE00003796862	40011279	40011349

Expression profiles

Bgee: expression breadth broad, 70 present calls, max score 83.52.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0332 / max 10.8189, expressed in 13 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
56212	0.0259	12
56211	0.0073	2

Top tissues by expression

70 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	83.52	gold quality
calcaneal tendon	UBERON:0003701	65.07	gold quality
ganglionic eminence	UBERON:0004023	63.74	gold quality
tibial artery	UBERON:0007610	63.08	gold quality
popliteal artery	UBERON:0002250	62.94	gold quality
monocyte	CL:0000576	56.64	gold quality
subcutaneous adipose tissue	UBERON:0002190	55.22	gold quality
bone marrow	UBERON:0002371	55.02	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	53.10	gold quality
adipose tissue	UBERON:0001013	52.97	gold quality
blood	UBERON:0000178	52.88	silver quality
urinary bladder	UBERON:0001255	52.84	gold quality
multicellular organism	UBERON:0000468	50.50	gold quality
lower esophagus	UBERON:0013473	50.23	gold quality
islet of Langerhans	UBERON:0000006	50.21	gold quality
lower esophagus muscularis layer	UBERON:0035833	50.18	gold quality
ascending aorta	UBERON:0001496	49.98	gold quality
thoracic aorta	UBERON:0001515	49.91	gold quality
gastrocnemius	UBERON:0001388	49.73	gold quality
endocervix	UBERON:0000458	49.39	gold quality
tibial nerve	UBERON:0001323	49.17	gold quality
right lobe of thyroid gland	UBERON:0001119	49.01	gold quality
left coronary artery	UBERON:0001626	48.50	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	47.85	gold quality
skin of leg	UBERON:0001511	47.50	gold quality
right atrium auricular region	UBERON:0006631	47.09	gold quality
thyroid gland	UBERON:0002046	47.07	gold quality
thoracic mammary gland	UBERON:0005200	46.04	gold quality
heart left ventricle	UBERON:0002084	45.86	gold quality
left lobe of thyroid gland	UBERON:0001120	45.80	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.76

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.