LINC00604

Summary

LINC00604 (long intergenic non-protein coding RNA 604, HGNC:43924) is a long non-coding RNA gene on chromosome 5p13.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:43924
Approved symbol	LINC00604
Name	long intergenic non-protein coding RNA 604
Location	5p13.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250585
Ensembl biotype	lncRNA
Entrez	106144578
RNAcentral	URS000212319F — lncRNA, 574 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000508437, ENST00000637924, ENST00000845160, ENST00000845161, ENST00000845162

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000508437 — 2 exons

Exon	Start	End
ENSE00004272390	40260607	40260853
ENSE00004272393	40267356	40267663

Expression profiles

Bgee: expression breadth broad, 65 present calls, max score 77.88.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0788 / max 132.1534, expressed in 2 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
56213	0.0614	1
56214	0.0173	2

Top tissues by expression

65 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.88	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	72.35	gold quality
urinary bladder	UBERON:0001255	68.15	silver quality
liver	UBERON:0002107	66.17	gold quality
ganglionic eminence	UBERON:0004023	65.44	gold quality
tonsil	UBERON:0002372	62.48	silver quality
myometrium	UBERON:0001296	59.56	silver quality
monocyte	CL:0000576	57.91	gold quality
stomach	UBERON:0000945	56.18	silver quality
blood	UBERON:0000178	56.12	gold quality
uterine cervix	UBERON:0000002	54.94	silver quality
ovary	UBERON:0000992	53.56	silver quality
lymph node	UBERON:0000029	53.51	gold quality
bone marrow	UBERON:0002371	52.22	silver quality
adult mammalian kidney	UBERON:0000082	51.00	gold quality
islet of Langerhans	UBERON:0000006	50.48	gold quality
prefrontal cortex	UBERON:0000451	49.04	gold quality
prostate gland	UBERON:0002367	48.99	silver quality
thyroid gland	UBERON:0002046	48.23	silver quality
heart left ventricle	UBERON:0002084	47.27	gold quality
pancreas	UBERON:0001264	46.39	gold quality
small intestine	UBERON:0002108	45.97	silver quality
esophagogastric junction muscularis propria	UBERON:0035841	45.93	gold quality
multicellular organism	UBERON:0000468	45.85	gold quality
Brodmann (1909) area 9	UBERON:0013540	45.33	silver quality
tibial artery	UBERON:0007610	44.25	gold quality
left ovary	UBERON:0002119	44.18	gold quality
gastrocnemius	UBERON:0001388	44.01	silver quality
esophagus mucosa	UBERON:0002469	43.80	gold quality
thoracic mammary gland	UBERON:0005200	43.38	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.10

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.