LINC00609

Summary

LINC00609 (long intergenic non-protein coding RNA 609, HGNC:43960) is a long non-coding RNA gene on chromosome 14q13.2-q13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:43960
Approved symbol	LINC00609
Name	long intergenic non-protein coding RNA 609
Location	14q13.2-q13.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	uc.373
Ensembl gene	ENSG00000257585
Ensembl biotype	lncRNA
Entrez	101101773
RNAcentral	URS00001F561A — lncRNA, 583 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 40 — 40 lncRNA

ENST00000546508, ENST00000550089, ENST00000556542, ENST00000660969, ENST00000662718, ENST00000665409, ENST00000668143, ENST00000668605, ENST00000670721, ENST00000685256, ENST00000686790, ENST00000691499, ENST00000700834, ENST00000818312, ENST00000818313, ENST00000818314, ENST00000818315, ENST00000818317, ENST00000818324, ENST00000818325, ENST00000818326, ENST00000818327, ENST00000818328, ENST00000818329, ENST00000818330, ENST00000818331, ENST00000818332, ENST00000818333, ENST00000818334, ENST00000818335, ENST00000818336, ENST00000818337, ENST00000818338, ENST00000818339, ENST00000818340, ENST00000818341, ENST00000818342, ENST00000818343, ENST00000818344, ENST00000818345

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000546508 — 3 exons

Exon	Start	End
ENSE00002333164	36164120	36164266
ENSE00002411708	36070427	36070685
ENSE00002416635	36165112	36165288

Expression profiles

Bgee: expression breadth broad, 70 present calls, max score 97.91.

Top tissues by expression

70 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
corpus callosum	UBERON:0002336	97.91	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	83.52	gold quality
substantia nigra	UBERON:0002038	76.32	gold quality
Ammon’s horn	UBERON:0001954	72.77	gold quality
colonic epithelium	UBERON:0000397	72.15	gold quality
ventricular zone	UBERON:0003053	69.90	gold quality
primary visual cortex	UBERON:0002436	68.81	gold quality
amygdala	UBERON:0001876	67.98	gold quality
temporal lobe	UBERON:0001871	67.84	gold quality
sural nerve	UBERON:0015488	66.50	gold quality
caudate nucleus	UBERON:0001873	65.26	gold quality
Brodmann (1909) area 9	UBERON:0013540	65.25	gold quality
left lobe of thyroid gland	UBERON:0001120	64.48	gold quality
nucleus accumbens	UBERON:0001882	64.13	gold quality
prefrontal cortex	UBERON:0000451	64.08	gold quality
thyroid gland	UBERON:0002046	63.82	gold quality
putamen	UBERON:0001874	63.52	gold quality
right lobe of thyroid gland	UBERON:0001119	63.51	gold quality
hypothalamus	UBERON:0001898	63.42	gold quality
brain	UBERON:0000955	62.66	gold quality
cerebral cortex	UBERON:0000956	62.52	gold quality
frontal cortex	UBERON:0001870	60.79	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	60.29	gold quality
anterior cingulate cortex	UBERON:0009835	58.99	gold quality
superior frontal gyrus	UBERON:0002661	58.37	gold quality
monocyte	CL:0000576	58.34	gold quality
multicellular organism	UBERON:0000468	58.20	gold quality
right frontal lobe	UBERON:0002810	57.92	gold quality
tibial nerve	UBERON:0001323	51.73	gold quality
thoracic mammary gland	UBERON:0005200	51.39	silver quality

Single-cell (SCXA)

Detected in 3 experiment(s), a significant marker in 2.

Experiment	Marker?	Max mean expression
E-HCAD-35	yes	1502.94
E-HCAD-25	yes	1187.14
E-ANND-3	no	1.80

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.