LINC00613

Summary

LINC00613 (long intergenic non-protein coding RNA 613, HGNC:44060) is a long non-coding RNA gene on chromosome 4q28.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:44060
Approved symbol	LINC00613
Name	long intergenic non-protein coding RNA 613
Location	4q28.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000248330
Ensembl biotype	lncRNA
Entrez	100507528
RNAcentral	URS000075C1CB — lncRNA, 500 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000504365, ENST00000505952, ENST00000508714

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000504365 — 4 exons

Exon	Start	End
ENSE00002026724	135867836	135867906
ENSE00002043130	135887971	135888090
ENSE00002050477	135867003	135867182
ENSE00002070577	135885417	135885512

Expression profiles

Bgee: expression breadth broad, 39 present calls, max score 79.17.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0027 / max 4.6296, expressed in 1 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
53968	0.0027	1

Top tissues by expression

39 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.17	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	75.19	gold quality
blood	UBERON:0000178	62.73	gold quality
monocyte	CL:0000576	59.76	gold quality
tibial nerve	UBERON:0001323	57.29	gold quality
prostate gland	UBERON:0002367	55.06	gold quality
anterior cingulate cortex	UBERON:0009835	55.01	gold quality
Brodmann (1909) area 9	UBERON:0013540	53.04	gold quality
Ammon’s horn	UBERON:0001954	52.33	gold quality
small intestine Peyer’s patch	UBERON:0003454	51.95	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	50.51	gold quality
vagina	UBERON:0000996	50.32	gold quality
intestine	UBERON:0000160	49.51	gold quality
ascending aorta	UBERON:0001496	49.07	gold quality
heart left ventricle	UBERON:0002084	48.87	gold quality
tibial artery	UBERON:0007610	48.41	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	48.29	gold quality
hypothalamus	UBERON:0001898	48.08	gold quality
multicellular organism	UBERON:0000468	47.75	gold quality
putamen	UBERON:0001874	47.52	gold quality
right frontal lobe	UBERON:0002810	47.03	gold quality
nucleus accumbens	UBERON:0001882	46.62	gold quality
substantia nigra	UBERON:0002038	46.28	gold quality
pituitary gland	UBERON:0000007	45.71	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	45.60	gold quality
skin of leg	UBERON:0001511	44.95	gold quality
endometrium	UBERON:0001295	44.77	silver quality
skin of abdomen	UBERON:0001416	44.76	gold quality
body of stomach	UBERON:0001161	43.90	gold quality
amygdala	UBERON:0001876	43.61	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.11

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.