LINC00620

Summary

LINC00620 (long intergenic non-protein coding RNA 620, HGNC:44223) is a long non-coding RNA gene on chromosome 3p25.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:44223
Approved symbol	LINC00620
Name	long intergenic non-protein coding RNA 620
Location	3p25.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000224514
Ensembl biotype	lncRNA
Entrez	285375
RNAcentral	URS000075D5C0 — lncRNA, 1050 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 19 — 19 lncRNA

ENST00000419618, ENST00000438915, ENST00000665476, ENST00000822209, ENST00000822210, ENST00000822211, ENST00000822212, ENST00000822213, ENST00000822214, ENST00000822215, ENST00000822216, ENST00000822217, ENST00000822218, ENST00000822219, ENST00000822220, ENST00000822221, ENST00000822222, ENST00000822223, ENST00000822224

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000419618 — 6 exons

Exon	Start	End
ENSE00001741386	13735636	13735828
ENSE00001770133	13650721	13650833
ENSE00001772762	13746244	13746637
ENSE00001773274	13688113	13688216
ENSE00001788378	13717688	13717760
ENSE00001790461	13718236	13718354

Expression profiles

Bgee: expression breadth broad, 68 present calls, max score 80.81.

Top tissues by expression

175 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.81	gold quality
right testis	UBERON:0004534	72.50	gold quality
left testis	UBERON:0004533	70.58	gold quality
testis	UBERON:0000473	67.85	gold quality
ventricular zone	UBERON:0003053	65.64	gold quality
prefrontal cortex	UBERON:0000451	57.97	gold quality
stromal cell of endometrium	CL:0002255	56.97	gold quality
right hemisphere of cerebellum	UBERON:0014890	55.77	gold quality
monocyte	CL:0000576	55.09	gold quality
amygdala	UBERON:0001876	54.87	gold quality
anterior cingulate cortex	UBERON:0009835	52.53	gold quality
hypothalamus	UBERON:0001898	52.21	gold quality
frontal cortex	UBERON:0001870	51.89	gold quality
neocortex	UBERON:0001950	51.71	gold quality
right frontal lobe	UBERON:0002810	51.62	gold quality
Brodmann (1909) area 9	UBERON:0013540	51.55	gold quality
cerebellar hemisphere	UBERON:0002245	51.15	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	50.55	gold quality
cerebral cortex	UBERON:0000956	49.07	gold quality
temporal lobe	UBERON:0001871	48.32	gold quality
forebrain	UBERON:0001890	48.14	gold quality
nucleus accumbens	UBERON:0001882	47.90	gold quality
brain	UBERON:0000955	47.84	gold quality
tendon of biceps brachii	UBERON:0008188	47.55	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	47.25	gold quality
substantia nigra	UBERON:0002038	47.02	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	46.77	gold quality
spinal cord	UBERON:0002240	46.55	gold quality
midbrain	UBERON:0001891	46.08	gold quality
anatomical system	UBERON:0000467	45.98	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.46

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.