LINC00635

Summary

LINC00635 (long intergenic non-protein coding RNA 635, HGNC:27184) is a long non-coding RNA gene on chromosome 3q13.12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27184
Approved symbol	LINC00635
Name	long intergenic non-protein coding RNA 635
Location	3q13.12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000241469
Ensembl biotype	lncRNA
Entrez	151658
RNAcentral	URS0000759AAC — lncRNA, 1774 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 170 — 170 lncRNA

ENST00000461121, ENST00000464359, ENST00000464823, ENST00000466155, ENST00000473528, ENST00000475362, ENST00000488852, ENST00000497811, ENST00000596110, ENST00000600240, ENST00000600749, ENST00000601385, ENST00000601930, ENST00000607880, ENST00000608110, ENST00000608137, ENST00000608306, ENST00000608307, ENST00000608506, ENST00000608647, ENST00000609366, ENST00000609429, ENST00000611829, ENST00000612802, ENST00000651423, ENST00000652781, ENST00000652909, ENST00000653096, ENST00000653371, ENST00000653396, ENST00000653441, ENST00000653488, ENST00000653786, ENST00000653921, ENST00000653978, ENST00000654163, ENST00000654294, ENST00000654391, ENST00000654402, ENST00000654469, ENST00000654744, ENST00000654791, ENST00000655189, ENST00000655371, ENST00000655401, ENST00000655585, ENST00000655764, ENST00000655880, ENST00000655909, ENST00000655953, ENST00000655963, ENST00000656074, ENST00000656409, ENST00000656947, ENST00000657127, ENST00000657498, ENST00000657564, ENST00000657604, ENST00000657753, ENST00000657775, ENST00000657888, ENST00000657924, ENST00000658017, ENST00000658329, ENST00000658554, ENST00000658615, ENST00000658750, ENST00000658864, ENST00000658986, ENST00000659467, ENST00000659536, ENST00000659652, ENST00000659916, ENST00000659968, ENST00000660018, ENST00000660345, ENST00000660352, ENST00000660460, ENST00000660536, ENST00000660798, ENST00000660921, ENST00000661001, ENST00000661095, ENST00000661131, ENST00000661558, ENST00000661906, ENST00000661985, ENST00000662048, ENST00000662126, ENST00000662148, ENST00000662270, ENST00000662334, ENST00000662526, ENST00000662623, ENST00000662730, ENST00000662738, ENST00000662775, ENST00000662882, ENST00000662954, ENST00000663199, ENST00000663423, ENST00000663457, ENST00000663486, ENST00000663588, ENST00000663731, ENST00000664025, ENST00000664221, ENST00000664360, ENST00000664451, ENST00000664623, ENST00000664670, ENST00000664795, ENST00000665140, ENST00000665269, ENST00000665328, ENST00000665676, ENST00000665780, ENST00000665981, ENST00000666132, ENST00000666444, ENST00000666591, ENST00000666614, ENST00000666616, ENST00000666732, ENST00000666880, ENST00000666919, ENST00000667016, ENST00000667044, ENST00000667094, ENST00000667116, ENST00000667209, ENST00000667333, ENST00000667470, ENST00000667506, ENST00000667572, ENST00000667594, ENST00000667812, ENST00000667924, ENST00000667930, ENST00000668129, ENST00000668184, ENST00000668484, ENST00000668522, ENST00000668583, ENST00000668644, ENST00000668684, ENST00000668845, ENST00000669004, ENST00000669044, ENST00000669080, ENST00000669373, ENST00000669522, ENST00000669684, ENST00000669919, ENST00000669982, ENST00000670251, ENST00000670442, ENST00000670568, ENST00000670810, ENST00000670825, ENST00000670846, ENST00000670878, ENST00000671051, ENST00000671339, ENST00000741976, ENST00000741977, ENST00000741978, ENST00000741979, ENST00000741980, ENST00000741981

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000461121 — 5 exons

Exon	Start	End
ENSE00001836596	107853873	107854054
ENSE00001854584	107843676	107843779
ENSE00001859880	107848906	107849118
ENSE00003733460	107855130	107855238
ENSE00003859528	107841668	107842212

Expression profiles

Bgee: expression breadth ubiquitous, 126 present calls, max score 84.90.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0788 / max 61.3476, expressed in 7 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
43640	0.0670	7
43639	0.0118	3

Top tissues by expression

126 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right testis	UBERON:0004534	84.90	gold quality
left testis	UBERON:0004533	84.79	gold quality
testis	UBERON:0000473	84.74	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.81	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	80.87	gold quality
corpus callosum	UBERON:0002336	69.96	gold quality
hindlimb stylopod muscle	UBERON:0004252	68.83	gold quality
calcaneal tendon	UBERON:0003701	67.30	gold quality
sural nerve	UBERON:0015488	66.76	gold quality
monocyte	CL:0000576	62.74	gold quality
leukocyte	CL:0000738	62.46	gold quality
adrenal tissue	UBERON:0018303	61.97	gold quality
endometrium	UBERON:0001295	61.80	gold quality
bone marrow	UBERON:0002371	61.14	gold quality
ganglionic eminence	UBERON:0004023	60.39	gold quality
superior frontal gyrus	UBERON:0002661	60.00	gold quality
cerebellar hemisphere	UBERON:0002245	59.54	gold quality
cerebellar cortex	UBERON:0002129	59.51	gold quality
cerebellum	UBERON:0002037	59.44	gold quality
body of pancreas	UBERON:0001150	59.22	gold quality
pancreas	UBERON:0001264	58.65	gold quality
right hemisphere of cerebellum	UBERON:0014890	58.55	gold quality
tonsil	UBERON:0002372	58.15	gold quality
blood	UBERON:0000178	57.57	gold quality
islet of Langerhans	UBERON:0000006	57.30	gold quality
fundus of stomach	UBERON:0001160	57.13	gold quality
skeletal muscle tissue	UBERON:0001134	56.94	gold quality
cortex of kidney	UBERON:0001225	56.91	gold quality
lymph node	UBERON:0000029	56.32	gold quality
right ovary	UBERON:0002118	56.30	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	6.47

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.