LINC00642

Summary

LINC00642 (long intergenic non-protein coding RNA 642, HGNC:44293) is a long non-coding RNA gene on chromosome 14q32.11.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:44293
Approved symbol	LINC00642
Name	long intergenic non-protein coding RNA 642
Location	14q32.11
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000233208
Ensembl biotype	lncRNA
Entrez	400238
RNAcentral	URS000075CF09 — lncRNA, 719 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 39 — 39 lncRNA

ENST00000419459, ENST00000442515, ENST00000444942, ENST00000653766, ENST00000654220, ENST00000654358, ENST00000654381, ENST00000655041, ENST00000656418, ENST00000657082, ENST00000658034, ENST00000658892, ENST00000659099, ENST00000660562, ENST00000661823, ENST00000663564, ENST00000663901, ENST00000666767, ENST00000666845, ENST00000668126, ENST00000849844, ENST00000849845, ENST00000849846, ENST00000849847, ENST00000849848, ENST00000849849, ENST00000849850, ENST00000849851, ENST00000849852, ENST00000849853, ENST00000849854, ENST00000849855, ENST00000849856, ENST00000849857, ENST00000849858, ENST00000849859, ENST00000849860, ENST00000849861, ENST00000849862

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000419459 — 3 exons

Exon	Start	End
ENSE00001683486	90456442	90457158
ENSE00001691802	90455271	90456270
ENSE00001794815	90458596	90458904

Expression profiles

Bgee: expression breadth ubiquitous, 126 present calls, max score 89.60.

Top tissues by expression

212 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	89.60	gold quality
buccal mucosa cell	CL:0002336	82.55	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.30	gold quality
biceps brachii	UBERON:0001507	79.28	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	78.24	gold quality
heart right ventricle	UBERON:0002080	77.29	gold quality
left testis	UBERON:0004533	77.18	gold quality
right testis	UBERON:0004534	76.65	gold quality
testis	UBERON:0000473	75.10	gold quality
myocardium	UBERON:0002349	75.03	gold quality
skeletal muscle tissue	UBERON:0001134	73.92	gold quality
vena cava	UBERON:0004087	73.59	gold quality
lateral nuclear group of thalamus	UBERON:0002736	73.03	gold quality
superficial temporal artery	UBERON:0001614	72.51	gold quality
quadriceps femoris	UBERON:0001377	72.44	gold quality
vastus lateralis	UBERON:0001379	72.38	gold quality
dorsal plus ventral thalamus	UBERON:0001897	71.57	gold quality
subthalamic nucleus	UBERON:0001906	71.24	gold quality
ventral tegmental area	UBERON:0002691	71.02	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	70.84	gold quality
deltoid	UBERON:0001476	70.73	gold quality
endothelial cell	CL:0000115	70.67	silver quality
cardia of stomach	UBERON:0001162	70.55	gold quality
inferior vagus X ganglion	UBERON:0005363	70.30	gold quality
substantia nigra pars compacta	UBERON:0001965	69.86	silver quality
body of tongue	UBERON:0011876	69.77	gold quality
tongue	UBERON:0001723	69.76	gold quality
saphenous vein	UBERON:0007318	69.72	gold quality
superior surface of tongue	UBERON:0007371	69.66	gold quality
medulla oblongata	UBERON:0001896	69.53	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.62

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.