LINC00652

Summary

LINC00652 (long intergenic non-protein coding RNA 652, HGNC:25003) is a long non-coding RNA gene on chromosome 20p11.23.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:25003
Approved symbol	LINC00652
Name	long intergenic non-protein coding RNA 652
Location	20p11.23
Locus type	RNA, long non-coding
Status	Approved
Aliases	HSPC072
Ensembl gene	ENSG00000179935
Ensembl biotype	lncRNA
Entrez	29075
RNAcentral	URS000075A4FE — lncRNA, 1574 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000412553, ENST00000454749, ENST00000455340, ENST00000654746, ENST00000662199, ENST00000664962, ENST00000669396, ENST00000670001

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000412553 — 3 exons

Exon	Start	End
ENSE00001764099	18786065	18788898
ENSE00001793971	18789574	18789709
ENSE00003877709	18793665	18794024

Expression profiles

Bgee: expression breadth ubiquitous, 155 present calls, max score 86.57.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2033 / max 8.0593, expressed in 124 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
186547	0.2033	124

Top tissues by expression

281 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
diaphragm	UBERON:0001103	86.57	gold quality
type B pancreatic cell	CL:0000169	77.00	gold quality
olfactory bulb	UBERON:0002264	76.87	gold quality
gluteal muscle	UBERON:0002000	74.57	gold quality
vastus lateralis	UBERON:0001379	73.76	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	73.32	gold quality
triceps brachii	UBERON:0001509	73.30	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	73.08	gold quality
quadriceps femoris	UBERON:0001377	72.59	gold quality
myocardium	UBERON:0002349	72.58	gold quality
left ventricle myocardium	UBERON:0006566	72.39	gold quality
nasal cavity epithelium	UBERON:0005384	71.25	gold quality
cardiac muscle of right atrium	UBERON:0003379	70.99	gold quality
parotid gland	UBERON:0001831	70.84	gold quality
tongue squamous epithelium	UBERON:0006919	70.60	gold quality
skeletal muscle tissue	UBERON:0001134	70.46	gold quality
CA1 field of hippocampus	UBERON:0003881	70.19	gold quality
biceps brachii	UBERON:0001507	70.04	gold quality
muscle tissue	UBERON:0002385	69.17	gold quality
mammary duct	UBERON:0001765	68.17	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	67.21	silver quality
epithelium of mammary gland	UBERON:0003244	66.52	gold quality
cortical plate	UBERON:0005343	66.02	gold quality
mucosa of urinary bladder	UBERON:0001259	65.93	gold quality
dorsal motor nucleus of vagus nerve	UBERON:0002870	65.93	gold quality
inferior olivary complex	UBERON:0002127	65.84	gold quality
pigmented layer of retina	UBERON:0001782	65.28	gold quality
lateral nuclear group of thalamus	UBERON:0002736	64.88	gold quality
secondary oocyte	CL:0000655	64.70	gold quality
Brodmann (1909) area 46	UBERON:0006483	64.20	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.54

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.