LINC00670

Summary

LINC00670 (long intergenic non-protein coding RNA 670, HGNC:44338) is a long non-coding RNA gene on chromosome 17p12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:44338
Approved symbol	LINC00670
Name	long intergenic non-protein coding RNA 670
Location	17p12
Locus type	RNA, long non-coding
Status	Approved
Aliases	FLJ34690, CARDINAL
Ensembl gene	ENSG00000179136
Ensembl biotype	lncRNA
Entrez	284034
RNAcentral	URS000075C0D7 — lncRNA, 2605 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 21 — 21 lncRNA

ENST00000313495, ENST00000577679, ENST00000577863, ENST00000660226, ENST00000671006, ENST00000698417, ENST00000698418, ENST00000698419, ENST00000722108, ENST00000722110, ENST00000722111, ENST00000722112, ENST00000722113, ENST00000722114, ENST00000722115, ENST00000722116, ENST00000722117, ENST00000722118, ENST00000722119, ENST00000722120, ENST00000722121

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000313495 — 4 exons

Exon	Start	End
ENSE00001251429	12635001	12637188
ENSE00001251441	12590441	12590748
ENSE00001251449	12584560	12584721
ENSE00002723904	12549782	12550077

Expression profiles

Bgee: expression breadth ubiquitous, 109 present calls, max score 80.32.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1800 / max 32.3279, expressed in 73 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
159614	0.0946	40
159615	0.0854	35

Top tissues by expression

109 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.32	gold quality
ascending aorta	UBERON:0001496	78.63	gold quality
thoracic aorta	UBERON:0001515	78.17	gold quality
popliteal artery	UBERON:0002250	77.57	gold quality
tibial artery	UBERON:0007610	77.54	gold quality
right coronary artery	UBERON:0001625	76.58	gold quality
left coronary artery	UBERON:0001626	75.49	gold quality
sural nerve	UBERON:0015488	72.94	silver quality
descending thoracic aorta	UBERON:0002345	71.78	gold quality
heart	UBERON:0000948	60.87	gold quality
ectocervix	UBERON:0012249	60.01	gold quality
heart left ventricle	UBERON:0002084	59.30	gold quality
placenta	UBERON:0001987	58.62	gold quality
calcaneal tendon	UBERON:0003701	58.39	gold quality
right atrium auricular region	UBERON:0006631	57.42	gold quality
subcutaneous adipose tissue	UBERON:0002190	56.77	gold quality
stromal cell of endometrium	CL:0002255	55.63	gold quality
myometrium	UBERON:0001296	55.05	gold quality
hindlimb stylopod muscle	UBERON:0004252	54.95	gold quality
right lung	UBERON:0002167	54.91	gold quality
apex of heart	UBERON:0002098	54.73	gold quality
adipose tissue	UBERON:0001013	54.64	gold quality
skeletal muscle tissue	UBERON:0001134	53.69	silver quality
body of uterus	UBERON:0009853	53.59	gold quality
muscle of leg	UBERON:0001383	53.29	gold quality
endometrium	UBERON:0001295	53.25	gold quality
gastrocnemius	UBERON:0001388	52.98	gold quality
muscle layer of sigmoid colon	UBERON:0035805	52.97	gold quality
blood	UBERON:0000178	52.39	silver quality
endocervix	UBERON:0000458	52.14	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.25

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.