LINC00674

Summary

LINC00674 (long intergenic non-protein coding RNA 674, HGNC:44355) is a unprocessed pseudogene on chromosome 17q24.2.

At a glance

• Gene type: non-coding (transcribed_unprocessed_pseudogene) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:44355
Approved symbol	LINC00674
Name	long intergenic non-protein coding RNA 674
Location	17q24.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	CALA
Ensembl gene	ENSG00000237854
Ensembl biotype	transcribed_unprocessed_pseudogene
Entrez	100499466
RNAcentral	URS000075B18A — lncRNA, 11210 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 transcribed_unprocessed_pseudogene

ENST00000590734

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000590734 — 2 exons

Exon	Start	End
ENSE00002754228	68101908	68101961
ENSE00002888119	68114422	68114527

Expression profiles

Bgee: expression breadth ubiquitous, 134 present calls, max score 89.94.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 33.4173 / max 307.1147, expressed in 1794 samples.

FANTOM5 promoters (7 alternative TSS)

Promoter ID	TPM avg	Samples expressed
162372	24.1580	1762
162369	4.8028	1320
162373	1.8116	999
162371	1.1234	700
162370	0.7445	417
162374	0.3914	175
208359	0.3856	192

Top tissues by expression

134 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
C1 segment of cervical spinal cord	UBERON:0006469	89.94	gold quality
hindlimb stylopod muscle	UBERON:0004252	86.92	gold quality
sural nerve	UBERON:0015488	85.86	gold quality
substantia nigra	UBERON:0002038	85.74	gold quality
amygdala	UBERON:0001876	85.18	gold quality
endocervix	UBERON:0000458	85.07	gold quality
skeletal muscle tissue	UBERON:0001134	85.07	gold quality
temporal lobe	UBERON:0001871	84.93	gold quality
mucosa of stomach	UBERON:0001199	84.70	gold quality
descending thoracic aorta	UBERON:0002345	84.64	gold quality
left coronary artery	UBERON:0001626	84.46	gold quality
popliteal artery	UBERON:0002250	84.23	gold quality
tibial artery	UBERON:0007610	84.23	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	84.19	gold quality
muscle of leg	UBERON:0001383	83.99	gold quality
gastrocnemius	UBERON:0001388	83.87	gold quality
Ammon’s horn	UBERON:0001954	83.45	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	83.30	gold quality
omental fat pad	UBERON:0010414	83.28	gold quality
thoracic aorta	UBERON:0001515	83.19	gold quality
ascending aorta	UBERON:0001496	83.17	gold quality
adrenal tissue	UBERON:0018303	83.13	gold quality
muscle tissue	UBERON:0002385	83.06	gold quality
corpus callosum	UBERON:0002336	82.94	gold quality
adipose tissue	UBERON:0001013	82.79	gold quality
leukocyte	CL:0000738	82.60	gold quality
heart	UBERON:0000948	82.58	gold quality
myometrium	UBERON:0001296	82.52	gold quality
monocyte	CL:0000576	82.47	gold quality
subcutaneous adipose tissue	UBERON:0002190	82.40	gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-GEOD-75367	no	310.37
E-ANND-3	no	0.00

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.