LINC00676

Summary

LINC00676 (long intergenic non-protein coding RNA 676, HGNC:44394) is a long non-coding RNA gene on chromosome 13q34.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:44394
Approved symbol	LINC00676
Name	long intergenic non-protein coding RNA 676
Location	13q34
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000234854
Ensembl biotype	lncRNA
Entrez	101409253
RNAcentral	URS000075B045 — lncRNA, 509 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000416090, ENST00000746431

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000416090 — 3 exons

Exon	Start	End
ENSE00001659367	109728282	109728545
ENSE00001695388	109729033	109729192
ENSE00001697436	109729958	109730007

Expression profiles

Bgee: expression breadth broad, 81 present calls, max score 85.90.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0066 / max 3.0627, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
136013	0.0066	3

Top tissues by expression

81 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.90	gold quality
pancreas	UBERON:0001264	66.18	gold quality
tonsil	UBERON:0002372	62.63	silver quality
bone marrow	UBERON:0002371	61.66	gold quality
skeletal muscle tissue	UBERON:0001134	61.14	silver quality
blood	UBERON:0000178	58.95	gold quality
right lobe of liver	UBERON:0001114	54.44	gold quality
liver	UBERON:0002107	54.23	gold quality
prefrontal cortex	UBERON:0000451	54.21	gold quality
monocyte	CL:0000576	53.83	gold quality
right hemisphere of cerebellum	UBERON:0014890	52.79	gold quality
calcaneal tendon	UBERON:0003701	52.67	silver quality
muscle of leg	UBERON:0001383	52.44	gold quality
corpus callosum	UBERON:0002336	51.40	gold quality
primary visual cortex	UBERON:0002436	51.25	gold quality
gastrocnemius	UBERON:0001388	51.12	gold quality
body of pancreas	UBERON:0001150	50.93	gold quality
heart left ventricle	UBERON:0002084	49.24	gold quality
heart	UBERON:0000948	48.93	gold quality
left coronary artery	UBERON:0001626	48.84	gold quality
Brodmann (1909) area 9	UBERON:0013540	48.06	gold quality
small intestine Peyer’s patch	UBERON:0003454	47.54	gold quality
multicellular organism	UBERON:0000468	47.29	gold quality
right atrium auricular region	UBERON:0006631	47.22	gold quality
omental fat pad	UBERON:0010414	47.16	gold quality
tibial artery	UBERON:0007610	47.15	gold quality
popliteal artery	UBERON:0002250	47.10	gold quality
myometrium	UBERON:0001296	46.91	gold quality
adipose tissue	UBERON:0001013	46.67	gold quality
kidney	UBERON:0002113	46.37	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.27

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.