LINC00678

Summary

LINC00678 (long intergenic non-protein coding RNA 678, HGNC:44413) is a long non-coding RNA gene on chromosome 11p14.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:44413
Approved symbol	LINC00678
Name	long intergenic non-protein coding RNA 678
Location	11p14.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000254934
Ensembl biotype	lncRNA
Entrez	101410541
RNAcentral	URS000075B645 — lncRNA, 962 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 42 — 42 lncRNA

ENST00000527083, ENST00000534757, ENST00000838903, ENST00000838904, ENST00000838905, ENST00000838906, ENST00000838907, ENST00000838908, ENST00000838909, ENST00000838910, ENST00000838911, ENST00000838912, ENST00000838913, ENST00000838914, ENST00000838915, ENST00000838916, ENST00000838917, ENST00000838918, ENST00000838919, ENST00000838920, ENST00000838921, ENST00000838922, ENST00000838923, ENST00000838924, ENST00000838925, ENST00000838926, ENST00000838927, ENST00000838928, ENST00000838929, ENST00000838930, ENST00000838931, ENST00000838932, ENST00000838933, ENST00000838934, ENST00000838935, ENST00000838936, ENST00000838937, ENST00000838938, ENST00000838939, ENST00000838940, ENST00000838941, ENST00000838942

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000527083 — 3 exons

Exon	Start	End
ENSE00002161228	27623950	27624145
ENSE00004260621	27616675	27618023
ENSE00004260625	27634331	27634730

Expression profiles

Bgee: expression breadth ubiquitous, 118 present calls, max score 75.26.

Top tissues by expression

118 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.26	silver quality
bone marrow cell	CL:0002092	69.69	silver quality
colonic epithelium	UBERON:0000397	66.61	silver quality
ventricular zone	UBERON:0003053	63.56	gold quality
cortical plate	UBERON:0005343	62.93	gold quality
ganglionic eminence	UBERON:0004023	61.94	gold quality
skeletal muscle tissue	UBERON:0001134	61.25	gold quality
bone marrow	UBERON:0002371	57.67	gold quality
primary visual cortex	UBERON:0002436	55.87	gold quality
liver	UBERON:0002107	55.52	silver quality
hindlimb stylopod muscle	UBERON:0004252	55.09	gold quality
sural nerve	UBERON:0015488	54.11	silver quality
monocyte	CL:0000576	53.13	silver quality
lymph node	UBERON:0000029	52.87	gold quality
endometrium	UBERON:0001295	52.15	gold quality
blood	UBERON:0000178	52.11	silver quality
ectocervix	UBERON:0012249	52.05	gold quality
adult mammalian kidney	UBERON:0000082	50.57	silver quality
kidney	UBERON:0002113	50.02	gold quality
uterine cervix	UBERON:0000002	49.94	gold quality
islet of Langerhans	UBERON:0000006	49.86	gold quality
gall bladder	UBERON:0002110	49.79	gold quality
tonsil	UBERON:0002372	49.59	gold quality
calcaneal tendon	UBERON:0003701	49.09	silver quality
prefrontal cortex	UBERON:0000451	48.64	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	48.58	gold quality
fundus of stomach	UBERON:0001160	48.49	gold quality
urinary bladder	UBERON:0001255	48.38	gold quality
placenta	UBERON:0001987	48.36	gold quality
vermiform appendix	UBERON:0001154	48.34	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.93

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.