LINC00687

Summary

LINC00687 (long intergenic non-protein coding RNA 687, HGNC:16194) is a long non-coding RNA gene on chromosome 20p12.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:16194
Approved symbol	LINC00687
Name	long intergenic non-protein coding RNA 687
Location	20p12.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	dJ1012F16.1
Ensembl gene	ENSG00000228422
Ensembl biotype	lncRNA
Entrez	728450
RNAcentral	URS0000E8186C — lncRNA, 1168 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000427835, ENST00000557899, ENST00000558175, ENST00000656506, ENST00000659465, ENST00000663254, ENST00000666572, ENST00000668731

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000427835 — 6 exons

Exon	Start	End
ENSE00001672591	11849507	11849658
ENSE00001782602	11809987	11810439
ENSE00003842959	11871899	11872193
ENSE00003843982	11878258	11878371
ENSE00003847207	11873147	11873217
ENSE00003849987	11870645	11870727

Expression profiles

Bgee: expression breadth ubiquitous, 121 present calls, max score 87.67.

Top tissues by expression

224 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	87.67	gold quality
right testis	UBERON:0004534	84.10	gold quality
left testis	UBERON:0004533	83.81	gold quality
testis	UBERON:0000473	80.38	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	73.09	gold quality
cortical plate	UBERON:0005343	68.63	gold quality
sural nerve	UBERON:0015488	68.59	gold quality
cardiac muscle of right atrium	UBERON:0003379	65.24	gold quality
colonic epithelium	UBERON:0000397	64.56	silver quality
ganglionic eminence	UBERON:0004023	63.10	gold quality
left ventricle myocardium	UBERON:0006566	62.69	gold quality
hindlimb stylopod muscle	UBERON:0004252	59.94	gold quality
tibialis anterior	UBERON:0001385	58.89	silver quality
myocardium	UBERON:0002349	55.79	gold quality
kidney epithelium	UBERON:0004819	53.93	gold quality
deltoid	UBERON:0001476	53.66	gold quality
upper arm skin	UBERON:0004263	53.52	gold quality
epithelial cell of pancreas	CL:0000083	53.35	gold quality
pigmented layer of retina	UBERON:0001782	53.26	gold quality
monocyte	CL:0000576	52.60	gold quality
calcaneal tendon	UBERON:0003701	52.51	silver quality
ileal mucosa	UBERON:0000331	51.29	silver quality
parotid gland	UBERON:0001831	51.29	gold quality
islet of Langerhans	UBERON:0000006	50.64	gold quality
cerebellar vermis	UBERON:0004720	50.41	gold quality
right lobe of liver	UBERON:0001114	50.35	gold quality
liver	UBERON:0002107	50.32	gold quality
muscle tissue	UBERON:0002385	49.62	silver quality
pancreas	UBERON:0001264	49.55	gold quality
pancreatic ductal cell	CL:0002079	49.30	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.73

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.