LINC00690

Summary

LINC00690 (long intergenic non-protein coding RNA 690, HGNC:44503) is a long non-coding RNA gene on chromosome 3p24.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:44503
Approved symbol	LINC00690
Name	long intergenic non-protein coding RNA 690
Location	3p24.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000233570
Ensembl biotype	lncRNA
Entrez	100996597
RNAcentral	URS000075D67C — lncRNA, 1383 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 22 — 22 lncRNA

ENST00000429949, ENST00000596963, ENST00000655456, ENST00000656250, ENST00000659804, ENST00000660552, ENST00000660612, ENST00000660669, ENST00000661146, ENST00000661221, ENST00000663006, ENST00000663672, ENST00000664830, ENST00000667160, ENST00000669122, ENST00000669844, ENST00000670078, ENST00000788174, ENST00000788175, ENST00000788176, ENST00000788177, ENST00000788178

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000429949 — 3 exons

Exon	Start	End
ENSE00001670076	16539376	16539526
ENSE00001672782	16540335	16541386
ENSE00003875790	16536272	16536432

Expression profiles

Bgee: expression breadth broad, 26 present calls, max score 97.00.

Top tissues by expression

174 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	97.00	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.56	gold quality
left testis	UBERON:0004533	75.44	gold quality
right testis	UBERON:0004534	74.17	gold quality
testis	UBERON:0000473	73.55	gold quality
buccal mucosa cell	CL:0002336	58.04	gold quality
tibialis anterior	UBERON:0001385	56.26	silver quality
upper lobe of lung	UBERON:0008948	56.15	silver quality
lower lobe of lung	UBERON:0008949	56.00	silver quality
adult organism	UBERON:0007023	55.61	gold quality
islet of Langerhans	UBERON:0000006	54.79	gold quality
cardiac muscle of right atrium	UBERON:0003379	54.34	gold quality
left ventricle myocardium	UBERON:0006566	54.23	gold quality
kidney epithelium	UBERON:0004819	53.93	gold quality
upper arm skin	UBERON:0004263	53.52	gold quality
epithelial cell of pancreas	CL:0000083	53.51	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	52.51	gold quality
deltoid	UBERON:0001476	51.74	gold quality
monocyte	CL:0000576	51.07	silver quality
sural nerve	UBERON:0015488	50.95	silver quality
pancreatic ductal cell	CL:0002079	50.59	silver quality
myocardium	UBERON:0002349	50.25	gold quality
tibial nerve	UBERON:0001323	49.47	gold quality
cerebellar vermis	UBERON:0004720	48.93	gold quality
gastrocnemius	UBERON:0001388	48.91	gold quality
quadriceps femoris	UBERON:0001377	47.32	gold quality
nasal cavity epithelium	UBERON:0005384	47.03	gold quality
ileal mucosa	UBERON:0000331	46.10	silver quality
metanephros	UBERON:0000081	46.07	gold quality
anatomical system	UBERON:0000467	45.50	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.79

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.