LINC00698

Summary

LINC00698 (long intergenic non-protein coding RNA 698, HGNC:27720) is a long non-coding RNA gene on chromosome 3p14.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27720
Approved symbol	LINC00698
Name	long intergenic non-protein coding RNA 698
Location	3p14.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000244342
Ensembl biotype	lncRNA
Entrez	285401
RNAcentral	URS000075DECA — lncRNA, 1848 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 12 — 12 lncRNA

ENST00000465262, ENST00000465684, ENST00000468072, ENST00000475886, ENST00000497573, ENST00000760706, ENST00000760707, ENST00000760708, ENST00000760709, ENST00000760710, ENST00000760711, ENST00000760712

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000465262 — 6 exons

Exon	Start	End
ENSE00001820733	62950471	62950518
ENSE00001825849	62952007	62952083
ENSE00001835332	63113577	63113711
ENSE00001849413	62953707	62953780
ENSE00001855972	62989134	62989265
ENSE00001946231	62985036	62985119

Expression profiles

Bgee: expression breadth broad, 86 present calls, max score 80.57.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.5405 / max 38.7723, expressed in 125 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
37118	0.4292	117
37117	0.1113	51

Top tissues by expression

188 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.57	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	69.70	gold quality
ganglionic eminence	UBERON:0004023	62.88	gold quality
secondary oocyte	CL:0000655	61.34	silver quality
skin of hip	UBERON:0001554	57.14	silver quality
hindlimb stylopod muscle	UBERON:0004252	56.34	gold quality
monocyte	CL:0000576	53.59	gold quality
prefrontal cortex	UBERON:0000451	51.60	gold quality
calcaneal tendon	UBERON:0003701	51.20	silver quality
islet of Langerhans	UBERON:0000006	51.19	gold quality
upper leg skin	UBERON:0004262	50.99	gold quality
muscle of leg	UBERON:0001383	50.12	gold quality
gastrocnemius	UBERON:0001388	49.04	gold quality
lymph node	UBERON:0000029	48.11	gold quality
pancreas	UBERON:0001264	47.94	gold quality
cortex of kidney	UBERON:0001225	46.92	gold quality
vermiform appendix	UBERON:0001154	46.70	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	46.02	gold quality
right ovary	UBERON:0002118	45.93	gold quality
tonsil	UBERON:0002372	45.41	gold quality
left coronary artery	UBERON:0001626	45.33	gold quality
muscle layer of sigmoid colon	UBERON:0035805	45.27	gold quality
gall bladder	UBERON:0002110	45.16	silver quality
left ovary	UBERON:0002119	44.63	gold quality
heart left ventricle	UBERON:0002084	44.58	silver quality
body of pancreas	UBERON:0001150	44.12	silver quality
caecum	UBERON:0001153	44.09	silver quality
oocyte	CL:0000023	43.96	gold quality
cardiac ventricle	UBERON:0002082	43.63	silver quality
putamen	UBERON:0001874	43.54	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.92

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.