LINC00824

Summary

LINC00824 (long intergenic non-protein coding RNA 824, HGNC:50281) is a long non-coding RNA gene on chromosome 8q24.21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50281
Approved symbol	LINC00824
Name	long intergenic non-protein coding RNA 824
Location	8q24.21
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000254275
Ensembl biotype	lncRNA
Entrez	101927774
RNAcentral	URS000075CEF3 — lncRNA, 3031 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 8 lncRNA, 1 retained_intron

ENST00000517583, ENST00000518044, ENST00000520206, ENST00000520766, ENST00000520824, ENST00000523173, ENST00000756796, ENST00000756797, ENST00000756798

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000517583 — 5 exons

Exon	Start	End
ENSE00002110507	128406261	128406633
ENSE00002110512	128414214	128414408
ENSE00002115336	128414541	128414690
ENSE00002124638	128415366	128415381
ENSE00002134745	128406776	128406846

Expression profiles

Bgee: expression breadth ubiquitous, 136 present calls, max score 84.95.

Top tissues by expression

229 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.95	gold quality
sural nerve	UBERON:0015488	77.21	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	76.33	gold quality
bone marrow cell	CL:0002092	69.69	silver quality
granulocyte	CL:0000094	63.35	gold quality
ventricular zone	UBERON:0003053	61.42	gold quality
mucosa of transverse colon	UBERON:0004991	59.06	gold quality
ganglionic eminence	UBERON:0004023	58.15	gold quality
leukocyte	CL:0000738	57.75	gold quality
monocyte	CL:0000576	55.89	gold quality
vermiform appendix	UBERON:0001154	55.59	gold quality
blood	UBERON:0000178	55.46	gold quality
upper leg skin	UBERON:0004262	54.67	silver quality
right lobe of liver	UBERON:0001114	54.43	gold quality
lymph node	UBERON:0000029	53.16	gold quality
small intestine Peyer’s patch	UBERON:0003454	51.32	gold quality
caecum	UBERON:0001153	50.94	gold quality
small intestine	UBERON:0002108	50.60	gold quality
prefrontal cortex	UBERON:0000451	50.27	gold quality
spleen	UBERON:0002106	50.15	gold quality
gall bladder	UBERON:0002110	50.09	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	48.77	gold quality
liver	UBERON:0002107	48.72	gold quality
pancreas	UBERON:0001264	48.15	silver quality
islet of Langerhans	UBERON:0000006	47.72	gold quality
uterine cervix	UBERON:0000002	47.38	gold quality
muscle of leg	UBERON:0001383	47.33	silver quality
body of pancreas	UBERON:0001150	47.32	silver quality
ectocervix	UBERON:0012249	46.83	gold quality
urinary bladder	UBERON:0001255	46.80	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.89

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• LINC01414/LINC00824 genetic polymorphisms in association with the susceptibility of chronic obstructive pulmonary disease. (PMID:34233676)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.